Issues

• KeyError after "Fetching taxonomic hierarchy of hits"

  gamcil/cblaster#133 · Filter by author Tim-Kirkwood opened on Oct 1, 2026

• One-off start coordinates confusion

  gamcil/cblaster#130 · Filter by author LucoDevro opened on May 22, 2026

• Remote BLAST retrieval crashes when NCBI result page does not contain <PRE> block

  gamcil/cblaster#128 · Filter by author leonfaure opened on Mar 19, 2026

• The output results have significantly decreased after the version update.

  gamcil/cblaster#127 · Filter by author dongbinhu8-rgb opened on Mar 9, 2026

• extract_clusters skipping annotation for first and last proteins

  gamcil/cblaster#123 · Filter by author galacmr opened on Jun 3, 2025
  1

• AttributeError: 'NoneType' object has no attribute 'group'

  gamcil/cblaster#114 · Filter by author corkdagga opened on Nov 20, 2024
  15

• illegal instruction & ValueError("Expected 'query_file' or 'query_ids', or 'query_profiles'")

  gamcil/cblaster#113 · Filter by author FranziNMicrobio opened on Sep 11, 2024
  1

• OSError: Unable to parse NCBI response

  gamcil/cblaster#104 · Filter by author GaoSpark opened on Jan 7, 2024
  4

• clinker plot_cluster legend issue

  gamcil/cblaster#103 · Filter by author MarcosVoutsinos opened on Dec 31, 2023

• Searching genomes without gene predictions

  gamcil/cblaster#102 · Filter by author kcamnairb opened on Sep 29, 2023

• RuntimeError: No e-mail or NCBI API key found, please run cblaster config

  gamcil/cblaster#101 · Filter by author brshcbio opened on Sep 18, 2023

• creating database failure from specific genbank files

  gamcil/cblaster#100 · Filter by author yamn29302 opened on Sep 6, 2023

• "zsh: illegal hardware instruction" error

  gamcil/cblaster#99 · Filter by author andtrum opened on Jul 26, 2023
  3

• cblaster remote error with large clusters

  gamcil/cblaster#98 · Filter by author HackenDirker opened on Jul 13, 2023
  1

• extract_clusters shifting reading frame

  gamcil/cblaster#97 · Filter by author McClenagoat opened on May 26, 2023
  1

• AttributeError: 'NoneType' object has no attribute 'group'

  gamcil/cblaster#96 · Filter by author yye88 opened on May 18, 2023
  6

• Tree plot with 5 hits maximun per specie

  gamcil/cblaster#95 · Filter by author Alvarosmb opened on Apr 14, 2023

• makedb from gbk files

  gamcil/cblaster#93 · Filter by author Tim-Kirkwood opened on Mar 24, 2023

• TypeError: __new__() missing 8 required positional arguments

  gamcil/cblaster#92 · Filter by author Tim-Kirkwood opened on Feb 28, 2023

• cblaster didn't create .dmnd out file???????

  gamcil/cblaster#91 · Filter by author neelam19051 opened on Feb 17, 2023
  11

• makedb always results in 'sqlite3.OperationalError: database is locked'

  gamcil/cblaster#89 · Filter by author jjsanchezgil opened on Jan 26, 2023
  2

• Saving session JSON from GUI

  gamcil/cblaster#88 · Filter by author DougSweeney opened on Jan 24, 2023

• problem with context.py

  gamcil/cblaster#85 · Filter by author orlowskamga opened on Jan 3, 2023
  9

• Error using makedb with gff and fa files

  gamcil/cblaster#81 · Filter by author Rene-Hoover opened on Jul 13, 2022
  5

• not able to proceed with gne and clinker

  gamcil/cblaster#80 · Filter by author pksun1 opened on Jun 14, 2022
  3