feat: per-sample reference support via manifest ref/ref_name columns - #68

Closed

mrvollger wants to merge 4 commits into

remove-leviofrom

feat-per-sample-refs

Commits on Aug 14, 2026

style: format shell blocks with snakefmt

Mitchell R. Vollger
and
claude
committed
096999d
ci: run checks on pull requests against any base branch

Mitchell R. Vollger
and
claude
committed
cb29984
refactor: remove the unused leviosam2 chain-lift rules

Mitchell R. Vollger
and
claude
committed
ddddc80
feat: per-sample reference support via manifest ref/ref_name columns

Mitchell R. Vollger
and
claude
committed
32b9e5d