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Achievement: Pull Sharkx2Achievement: YOLO

Achievements

Achievement: Pull Sharkx2Achievement: YOLO

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  1. AutoMCT AutoMCT Public

    Automated 3D analysis and segmentation of microCT data from BMP file stacks. Includes a Python library with CLI interface for batch processing, plus specialized mandible analysis workflows with seg…

    Jupyter Notebook

  2. HPC-Metagenomics HPC-Metagenomics Public

    A parallelized HPC workflow for shotgun metagenomic data that uses KneadData for quality control, Kraken2 for classification, Bracken for generating taxonomic profiles and HUMAnN3 for functional an…

    Shell

  3. Uniprot-Conversion-Headless Uniprot-Conversion-Headless Public

    Python implementation to convert gene names to Uniprot IDs

    Python 1

  4. DuckPlanner DuckPlanner Public

    Improved class schedule builder for UO academic classes

    Python