Moist nudging of qc

CMake/BuildERFExe.cmake

@@ -404,7 +404,6 @@ function(build_erf_lib erf_lib_name)
        ${SRC_DIR}/SourceTerms/ERF_MakeGradP.cpp
        ${SRC_DIR}/SourceTerms/ERF_MakeMomSources.cpp
        ${SRC_DIR}/SourceTerms/ERF_MakeSources.cpp
-       ${SRC_DIR}/SourceTerms/ERF_MoistSetRhs.cpp
        ${SRC_DIR}/SourceTerms/ERF_NumericalDiffusion.cpp
        ${SRC_DIR}/SourceTerms/ERF_ForestDrag.cpp
        ${SRC_DIR}/SourceTerms/ERF_ApplySurfaceTreatment_BulkCoeff.cpp 

Source/SourceTerms/ERF_AddMoistNudgingTerms.cpp

@@ -1,6 +1,7 @@
 #if defined(ERF_USE_NETCDF)
 
 #include <ERF_SrcHeaders.H>
+#include <ERF_Utils.H>
 
 using namespace amrex;
 
@@ -26,41 +27,188 @@ using namespace amrex;
 
 void add_moist_nudging_terms (const MultiFab& S_data,
                                     MultiFab & source,
+                              const int n_qstate,
                               const Real& dt,
-                              const Real& old_stage_time_total,
+                              const Real& time,
                               const Real& start_bdy_time,
                               const Real& final_bdy_time,
                               const Real& bdy_time_interval,
-                              const Real& bdy_factor,
-                              int  width,
+                              const Real& nudge_factor,
+                              const int width,
                               const Geometry& geom,
                               Vector<Vector<FArrayBox>>& bdy_data_xlo,
                               Vector<Vector<FArrayBox>>& bdy_data_xhi,
                               Vector<Vector<FArrayBox>>& bdy_data_ylo,
                               Vector<Vector<FArrayBox>>& bdy_data_yhi,
-                              std::unique_ptr<ReadBndryPlanes>& m_r2d)
+                              std::unique_ptr<ReadBndryPlanes>& m_r2d,
+                              const Real& c_p,
+                              const Real& rdOcp)
 {
     BL_PROFILE_REGION("erf_add_moist_nudging_terms()");
 
     const Box domain = geom.Domain();
 
+    int bdy_comp = BCVars::RhoQ1_bc_comp;
+    Array4<Real> bdatxlo, bdatxhi, bdatylo, bdatyhi;
+
+    // Relaxation constants
+    Real F1 = one/(nudge_factor*dt);
+
+    // Domain bounds
+    const auto& dom_hi = ubound(domain);
+    const auto& dom_lo = lbound(domain);
+    auto dx = geom.CellSizeArray();
+    auto ProbHi = geom.ProbHiArray();
+    auto ProbLo = geom.ProbLoArray();
+
+    // Time interpolation
+    Real dT = bdy_time_interval;
+
+    //
+    // Note that time (= start_time+old_stage_time)  is measured as total time
+    //           start_bdy_time and final_bdy_time are also measured as total time
+    //
+
+    int n_time    = static_cast<int>( (time-start_bdy_time) /  dT);
+    int n_time_p1 = n_time + 1;
+    Real alpha    = ((time-start_bdy_time) - n_time * dT) / dT;
+
+    // Do not over run the last bdy file
+    if (time >= final_bdy_time) {
+      n_time    = static_cast<int>( (final_bdy_time - start_bdy_time)/ dT);
+      n_time_p1 = n_time;
+      alpha     = zero;
+    }
+
+    AMREX_ALWAYS_ASSERT( alpha >= zero && alpha <= one);
+    Real oma   = one - alpha;
+
+    // Limiting offset
+    int offset = width - 1;
+
     for (MFIter mfi(S_data,TilingIfNotGPU()); mfi.isValid(); ++mfi)
     {
         Box tbx  = mfi.tilebox();
 
-        const Array4<const Real>& new_cons_const = S_data.const_array(mfi);
-        const Array4<      Real>& src_arr        = source.array(mfi);
+        const Array4<const Real>& cons_arr = S_data.const_array(mfi);
+
+        // We will add to source terms for moist variables and
+        //    to source term for (rho theta)
+        const Array4<      Real>&  src_arr = source.array(mfi);
+
         //
-        // Note that old_stage_time_total = start_time+old_stage_time is total time
+        // Note that time = start_time+old_stage_time is total time
         //           start_bdy_time and final_bdy_time are total time
         //
-        moist_set_rhs(geom, tbx, new_cons_const, src_arr,
-                      old_stage_time_total, dt,
-                      start_bdy_time, final_bdy_time, bdy_time_interval,
-                      bdy_factor, width, domain,
-                      bdy_data_xlo, bdy_data_xhi,
-                      bdy_data_ylo, bdy_data_yhi,
-                      m_r2d);
-    }
+        // moist_set_rhs(geom, tbx, cons_arr, src_arr, n_qstate,
+        //               old_stage_time_total, dt,
+        //               start_bdy_time, final_bdy_time, bdy_time_interval,
+        //               bdy_factor, width, domain,
+        //               bdy_data_xlo, bdy_data_xhi,
+        //               bdy_data_ylo, bdy_data_yhi,
+        //               m_r2d);
+
+        // Get bndry data
+        if (m_r2d) {
+            Vector<std::unique_ptr<PlaneVector>>& bndry_data = m_r2d->interp_in_time(time);
+            bdatxlo = (*bndry_data[0])[0].array();
+            bdatylo = (*bndry_data[1])[0].array();
+            bdatxhi = (*bndry_data[3])[0].array();
+            bdatyhi = (*bndry_data[4])[0].array();
+        }
+
+        // NOTE: The sizing of the temporary BDY FABS is
+        //       GLOBAL and occurs over the entire BDY region.
+
+        // Size the FABs
+        //==========================================================
+        // NOTE: No ghost cells, we force mask to be idx type (0,0,0)
+        IntVect ng_vect(0);
+        Box gdom(domain); gdom.grow(ng_vect);
+        Box bx_xlo, bx_xhi, bx_ylo, bx_yhi;
+        realbdy_interior_bxs_xy(gdom, domain, width,
+                                bx_xlo, bx_xhi,
+                                bx_ylo, bx_yhi,
+                                ng_vect, true);
+
+        // Temporary FABs for storage (owned/filled on all ranks)
+        FArrayBox QV_xlo, QV_xhi, QV_ylo, QV_yhi;
+        QV_xlo.resize(bx_xlo,1,The_Async_Arena()); QV_xhi.resize(bx_xhi,1,The_Async_Arena());
+        QV_ylo.resize(bx_ylo,1,The_Async_Arena()); QV_yhi.resize(bx_yhi,1,The_Async_Arena());
+
+        // Populate FABs from bdy interpolation (primitive vars)
+        //==========================================================
+        const auto& bdatxlo_n   = bdy_data_xlo[n_time   ][WRFBdyVars::QV].const_array();
+        const auto& bdatxlo_np1 = bdy_data_xlo[n_time_p1][WRFBdyVars::QV].const_array();
+        const auto& bdatxhi_n   = bdy_data_xhi[n_time   ][WRFBdyVars::QV].const_array();
+        const auto& bdatxhi_np1 = bdy_data_xhi[n_time_p1][WRFBdyVars::QV].const_array();
+        const auto& bdatylo_n   = bdy_data_ylo[n_time   ][WRFBdyVars::QV].const_array();
+        const auto& bdatylo_np1 = bdy_data_ylo[n_time_p1][WRFBdyVars::QV].const_array();
+        const auto& bdatyhi_n   = bdy_data_yhi[n_time   ][WRFBdyVars::QV].const_array();
+        const auto& bdatyhi_np1 = bdy_data_yhi[n_time_p1][WRFBdyVars::QV].const_array();
+
+        // Get Array4 of interpolated values
+        Array4<Real> arr_xlo = QV_xlo.array();  Array4<Real> arr_xhi = QV_xhi.array();
+        Array4<Real> arr_ylo = QV_ylo.array();  Array4<Real> arr_yhi = QV_yhi.array();
+
+        Box gtbx = grow(tbx,ng_vect);
+        Box tbx_xlo, tbx_xhi, tbx_ylo, tbx_yhi;
+        realbdy_interior_bxs_xy(gtbx, domain, width,
+                                tbx_xlo, tbx_xhi,
+                                tbx_ylo, tbx_yhi,
+                                ng_vect, true);
+
+        // Populate with interpolation (protect from ghost cells)
+        ParallelFor(tbx_xlo, tbx_xhi,
+        [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+        {
+            int ii = std::min(std::max(i , dom_lo.x), dom_lo.x+offset);
+            int jj = std::min(std::max(j , dom_lo.y), dom_hi.y       );
+            arr_xlo(i,j,k) = (bdatxlo) ? cons_arr(i,j,k,Rho_comp) * bdatxlo(ii,jj,k,bdy_comp) :
+                cons_arr(i,j,k,Rho_comp) * ( oma   * bdatxlo_n  (ii,jj,k)
+                                           + alpha * bdatxlo_np1(ii,jj,k) );
+        }    ,
+        [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+        {
+            int ii = std::min(std::max(i , dom_hi.x-offset), dom_hi.x);
+            int jj = std::min(std::max(j , dom_lo.y       ), dom_hi.y);
+            arr_xhi(i,j,k) = (bdatxhi) ? cons_arr(i,j,k,Rho_comp) * bdatxhi(ii,jj,k,bdy_comp) :
+                cons_arr(i,j,k,Rho_comp) * ( oma   * bdatxhi_n  (ii,jj,k)
+                                           + alpha * bdatxhi_np1(ii,jj,k) );
+        });
+
+        ParallelFor(tbx_ylo, tbx_yhi,
+        [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+        {
+            int ii = std::min(std::max(i , dom_lo.x), dom_hi.x       );
+            int jj = std::min(std::max(j , dom_lo.y), dom_lo.y+offset);
+            arr_ylo(i,j,k) = (bdatylo) ? cons_arr(i,j,k,Rho_comp) * bdatylo(ii,jj,k,bdy_comp) :
+                cons_arr(i,j,k,Rho_comp) * ( oma   * bdatylo_n  (ii,jj,k)
+                                           + alpha * bdatylo_np1(ii,jj,k) );
+        },
+       [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+       {
+           int ii = std::min(std::max(i , dom_lo.x       ), dom_hi.x);
+           int jj = std::min(std::max(j , dom_hi.y-offset), dom_hi.y);
+               jj = std::min(jj, dom_hi.y);
+               arr_yhi(i,j,k) = (bdatyhi) ? cons_arr(i,j,k,Rho_comp) * bdatyhi(ii,jj,k,bdy_comp) :
+                   cons_arr(i,j,k,Rho_comp) * ( oma   * bdatyhi_n  (ii,jj,k)
+                                              + alpha * bdatyhi_np1(ii,jj,k) );
+       });
+
+       realbdy_interior_bxs_xy(tbx, domain, width,
+                               tbx_xlo, tbx_xhi,
+                               tbx_ylo, tbx_yhi,
+                               ng_vect);
+
+       //
+       // Add relaxation terms for moist variables and (rho theta) to existing source terms
+       //
+       realbdy_compute_relaxation(RhoQ1_comp, n_qstate,
+                                  width, dx, ProbLo, ProbHi, F1,
+                                  tbx_xlo , tbx_xhi , tbx_ylo , tbx_yhi ,
+                                  arr_xlo , arr_xhi , arr_ylo , arr_yhi ,
+                                  cons_arr, src_arr, c_p, rdOcp);
+   } // mfi
 }
 #endif