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Help needed with CROP-seq / open_pipeline isses

Status: Open.

#29 In epigen/open_pipelines;

· LJK1991 opened on Mar 30, 2021

sambamba command not called as defined in the tools section of the atacseq.yaml pipeline file when generating oracle_FRiP using sambamba view

Status: Open.

#22 In epigen/open_pipelines;

· cschmidl opened on Jun 4, 2020

ATAC-seq pipeline exit if no mitochondrial reads are duplicated

Status: Open.

#14 In epigen/open_pipelines;

· cschmidl opened on Oct 30, 2018

Add all required arguments as pipelines inputs

Status: Open.

#11 In epigen/open_pipelines;

· afrendeiro opened on Jan 26, 2018

Add FASTQ input to all pipelines

Status: Open.

#10 In epigen/open_pipelines;

· afrendeiro opened on Jan 26, 2018

Question: program naming for pipeline scripts

Status: Open.

#9 In epigen/open_pipelines;

· vreuter opened on Nov 16, 2017

Leveraging pypiper ngstk

Status: Open.

#7 In epigen/open_pipelines;

· vreuter opened on Sep 28, 2017

Peak count stat for SPP

Status: Open.

#6 In epigen/open_pipelines;

· vreuter opened on Aug 24, 2017

Attribute reference to 'bigwig' on Sample in chipseq.py

Status: Open.

#4 In epigen/open_pipelines;

· vreuter opened on Aug 17, 2017