Good afternoon,
I would like to annotate the cells in my Seurat object.
It was simple when I had one patient in my Seurat object with:
pbmc_counts_1 <- GetAssayData(kid.filtered, slot = 'counts.Patient_1')
pred <- SingleR(test = pbmc_counts_1,
ref = ref,
labels = ref$label.main)
However, how do I do it with several patients? I would also like to annotate based on the counts of patients 2, 3,etc.:
Please post issues in https://github.com/LTLA/SingleR
Thank you very much for any input!
Good afternoon,
I would like to annotate the cells in my Seurat object.
It was simple when I had one patient in my Seurat object with:
However, how do I do it with several patients? I would also like to annotate based on the counts of patients 2, 3,etc.:
Please post issues in https://github.com/LTLA/SingleR
Thank you very much for any input!