Correct the transport, VS Code, and standalone specs; retire persistsSession

.claude/skills/debug-standalone-agent-browser/SKILL.md

@@ -24,7 +24,7 @@ The harness:
 - opens the app in `agent-browser`
 - mirrors browser console logs as `[browser log] ...` in the harness terminal
 
-Port and session overrides are documented in `docs/specs/transport.md` → "Standalone browser-dev harness".
+Port and session overrides are documented in `docs/specs/standalone.md` → "Standalone browser-dev harness".
 
 ## Freshness
 
@@ -46,7 +46,7 @@ agent-browser --session <outer-session> eval '(()=>(!!document.querySelector("te
 
 Browser console mirroring (`[browser log] ...`) keeps working after a manual re-open, so you don't lose log visibility.
 
-Parallel worktrees are isolated automatically (`docs/specs/transport.md` → "Standalone browser-dev harness"). Inside Dormouse, use `dor ensure -- pnpm innerdogfood`; the harness opens its browser pane. Stop only your own harness with Ctrl-C after a timing run.
+Parallel worktrees are isolated automatically (`docs/specs/standalone.md` → "Standalone browser-dev harness"). Inside Dormouse, use `dor ensure -- pnpm innerdogfood`; the harness opens its browser pane. Stop only your own harness with Ctrl-C after a timing run.
 
 ## Driving Dormouse
 

AGENTS.md

@@ -11,7 +11,7 @@ pnpm build       # build lib, vscode extension, Pocket, and website
 
 **Inside Dormouse, run `innerdogfood`** — `dor ensure -- pnpm innerdogfood`.
 The harness opens its browser pane and prints its URL and browser command
-(`docs/specs/transport.md` → "Standalone browser-dev harness").
+(`docs/specs/standalone.md` → "Standalone browser-dev harness").
 
 **Open every PR as a draft.** Chromatic bills per snapshot and skips drafts, so
 marking a PR ready for review is what spends them.

TESTING_AND_MODIFICATION_GUIDE.md

@@ -217,7 +217,7 @@ the heading, and the rule gets a `(rationale)` marker.
 | Persistence and restore | `lib/src/lib/window-session-aggregator.ts`, `standalone/src/window-restore.ts`, Rust `save_session` etc. | `standalone.md` → Persistence; `transport.md` |
 | `dor workspace` verbs, `dor list` | `dor/src/commands/workspace.ts`, `list.ts`, `dor/src/protocol.ts`, `dor/src/control-client.ts`, `dor/src/commands/types.ts`; window handler `lib/src/components/wall/workspace-control.ts`; router `dor-control-router.ts` | `dor-cli.md` → dor workspace, Standalone, Handle Model |
 | Platform hooks the stack added | `onPtyMarked`, `transferWorkspace` on `PlatformAdapter` (`lib/src/lib/platform/types.ts`), implemented in `standalone/src/tauri-adapter.ts` and `browser-sidecar-adapter.ts` | `transport.md` |
-| Browser harness | `standalone/scripts/dev-agent-browser.mjs` (`invokeMap`, `fireAndForget`), `browser-sidecar-adapter.ts` | `transport.md` → Standalone browser-dev harness |
+| Browser harness | `standalone/scripts/dev-agent-browser.mjs` (`invokeMap`, `fireAndForget`), `browser-sidecar-adapter.ts` | `standalone.md` → Standalone browser-dev harness |
 
 ## 7. Rules that bite
 

docs/specs/auto-update.md

@@ -45,7 +45,7 @@ Update status is a text notice in the Baseboard, the always-visible bottom strip
 
 ### Debug report on failure
 
-**"Click here to debug" opens `UpdateDebugModal`, which snapshots the failure** (version + error string) so a later state change cannot alter it. Two steps (rationale): a GitHub issue *search* seeded with the error's first 80 characters **unquoted**, so GitHub can fuzzy-match; and a copyable markdown report from `buildDebugReport()` — app version, `PLATFORM_STRING`, the error, and the log tail. The tail is `read_update_log`'s last 10 KB of `dormouse.log`, sliced on a char boundary; **a failed read is embedded as a placeholder, never aborts the report**.
+**"Click here to debug" opens `UpdateDebugModal`, which snapshots the failure** (version + error string) so a later state change cannot alter it. Two steps (rationale): a GitHub issue *search* seeded with the error's first 80 characters **unquoted**, so GitHub can fuzzy-match; and a copyable markdown report from `buildDebugReport()` — app version, `PLATFORM_STRING`, the error, and the log tail. The tail is `read_update_log`'s last 10,000 bytes of `dormouse.log`, sliced on a char boundary; **a failed read is embedded as a placeholder, never aborts the report**.
 
 ### Threading
 
@@ -84,12 +84,7 @@ Single key: `dormouse:update-result`
 | [`standalone/src/updater.test.ts`](../../standalone/src/updater.test.ts) | Pins the updater lifecycle and ordering |
 | [`standalone/src/UpdateBanner.tsx`](../../standalone/src/UpdateBanner.tsx) | Presentational notice content for the Baseboard |
 | [`standalone/src/UpdateDebugModal.tsx`](../../standalone/src/UpdateDebugModal.tsx) | Failure modal: issue search + copyable report |
-| [`standalone/src/quit.ts`](../../standalone/src/quit.ts) | Quit orchestrator (`docs/specs/standalone.md` §Quit flow); calls `installPendingUpdate()` last |
-| [`standalone/src/main.tsx`](../../standalone/src/main.tsx) | `<ConnectedUpdateBanner />` (banner + modal) as `<App />`'s `baseboardNotice`; `startUpdateCheck()` after restore |
 | [`standalone/src-tauri/tauri.conf.json`](../../standalone/src-tauri/tauri.conf.json) | Updater endpoint, public key, artifact mode, Windows install mode |
-| [`standalone/src-tauri/src/lib.rs`](../../standalone/src-tauri/src/lib.rs) | Plugin registration, sidecar teardown, update-log tail, `quit_restart` |
-| [`standalone/src-tauri/capabilities/default.json`](../../standalone/src-tauri/capabilities/default.json) | Shell and window permissions, for `main` and every `ws-*` window |
-| [`standalone/src-tauri/capabilities/main-only.json`](../../standalone/src-tauri/capabilities/main-only.json) | Updater and app-version permissions, scoped to `main` alone |
 
 ## Configuration