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Bump the all-rust-dependencies group across 1 directory with 13 updates - #38

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Bumps the all-rust-dependencies group with 13 updates in the / directory:

Package From To
anyhow 1.0.103 1.0.104
camino 1.2.4 1.2.5
noodles 0.112.0 0.113.0
serde 1.0.228 1.0.229
serde_json 1.0.150 1.0.151
toml 1.1.2+spec-1.1.0 1.1.3+spec-1.1.0
quote 1.0.46 1.0.47
proc-macro2 1.0.106 1.0.107
tokio 1.52.3 1.53.1
syn 2.0.118 3.0.3
bstr 1.12.3 1.13.0
futures 0.3.32 0.3.33
clap 4.6.1 4.6.4

Updates anyhow from 1.0.103 to 1.0.104

Release notes

Sourced from anyhow's releases.

1.0.104

  • Update syn dev-dependency to version 3
Commits

Updates camino from 1.2.4 to 1.2.5

Release notes

Sourced from camino's releases.

camino 1.2.5

Fixed

Removed unnecessary files from the package.

Changelog

Sourced from camino's changelog.

[1.2.5] - 2026-07-28

Fixed

Removed unnecessary files from the package.

Commits

Updates noodles from 0.112.0 to 0.113.0

Commits
  • fe2b112 Update to noodles 0.113.0
  • 77aded2 bgzf/io/multithreaded_reader: Discard channel disconnection errors when not r...
  • 05fdecf bam/record/sequence: Use base count for Sequence::is_empty
  • 2b4375b vcf/io/writer/builder: Fix typo
  • 9ee7faa vcf/record/fields: Initialize default to match RecordBuf
  • 40255f6 vcf/variant/record_buf/info: Fix typo
  • 3475768 vcf/variant/record_buf/filters: Require a single PASS filter for passing status
  • 548590a sam/io/reader/record: Only strip carriage return from CRLF newline
  • 8a034ce bed/io/reader/record: Only strip carriage return from CRLF newline
  • aee586c vcf/io/reader/record: Only strip carriage return from CRLF newline
  • Additional commits viewable in compare view

Updates serde from 1.0.228 to 1.0.229

Release notes

Sourced from serde's releases.

v1.0.229

  • Update to syn 3
Commits
  • 7fc3b4c Release 1.0.229
  • 6d6e9a1 Merge pull request #3085 from dtolnay/syn3
  • 6dec3b7 Update to syn 3
  • cfe6692 Resolve mut_mut pedantic clippy lint
  • 1023d07 Update actions/upload-artifact@v6 -> v7
  • dd682c2 Update actions/checkout@v6 -> v7
  • 5f0f18b Update ui test suite to nightly-2026-06-01
  • 63a1498 Regenerate stderr with trybuild normalization fixes
  • fa7da4a Fix unused_features warning
  • 6b1a178 Unpin CI miri toolchain
  • Additional commits viewable in compare view

Updates serde_json from 1.0.150 to 1.0.151

Release notes

Sourced from serde_json's releases.

v1.0.151

Commits
  • de85007 Release 1.0.151
  • 3b2b3c5 Merge pull request #1331 from WonderLawrence/rawvalue-from-string-unchecked
  • 0406d96 Debug-assert well-formedness and no-whitespace in from_string_unchecked
  • cf16f75 Add RawValue::from_string_unchecked
  • 827a315 Update actions/upload-artifact@v6 -> v7
  • cea36a5 Update actions/checkout@v6 -> v7
  • See full diff in compare view

Updates toml from 1.1.2+spec-1.1.0 to 1.1.3+spec-1.1.0

Commits

Updates quote from 1.0.46 to 1.0.47

Release notes

Sourced from quote's releases.

1.0.47

  • Documentation improvements
Commits

Updates proc-macro2 from 1.0.106 to 1.0.107

Release notes

Sourced from proc-macro2's releases.

1.0.107

  • Documentation improvements
Commits
  • ed8a549 Release 1.0.107
  • d2550fb Update documentation links to syn 3
  • 0bf387d Resolve redundant_else pedantic clippy lint
  • 949d696 Update actions/upload-artifact@v6 -> v7
  • 294a2bb Update actions/checkout@v6 -> v7
  • cd46c1b Lint clippy::from_iter_instead_of_collect has been removed
  • bb38d83 Update afl fuzzer from 0.17 to 0.18
  • 0f510db Unpin CI miri toolchain
  • b3c5fe3 Pin CI miri to nightly-2026-02-11
  • 7e2a990 Raise required compiler to Rust 1.71
  • Additional commits viewable in compare view

Updates tokio from 1.52.3 to 1.53.1

Release notes

Sourced from tokio's releases.

Tokio v1.53.1

1.53.1 (July 20th, 2026)

Fixed

  • signal: restore MSRV by removing OnceLock::wait from the Windows handler (#8300)

Fixed (unstable)

  • time: fix alt timer cancellation and insertion race (#8252)

Documented

  • runtime: remove dead link definition in Runtime::block_on (#8301)

#8252: tokio-rs/tokio#8252 #8300: tokio-rs/tokio#8300 #8301: tokio-rs/tokio#8301

Tokio v1.53.0

1.53.0 (July 17th, 2026)

Added

  • fs: implement From<OwnedFd> and From<OwnedHandle> for File (#8266)
  • metrics: add task schedule latency metric (#7986)
  • net: add SocketAddr methods to Unix sockets (#8144)

Changed

  • io: add #[inline] to IO trait impls for in-memory types (#8242)
  • net: implement UCred::pid on FreeBSD (#8086)
  • net: support Nuttx target os (#8259)
  • signal: refactor global variables on Windows (#8231)
  • sync: mpsc::{Receiver,UnboundedReceiver} now drops waker on drop, even if there are still senders (#8095)
  • taskdump: support taskdumps on s390x (#8192)
  • time: add #[track_caller] to timeout_at() (#8077)
  • time: consolidate mutex locks on spurious poll (#8124)
  • time: defer waker clone on spurious poll (#8107)
  • time: move lazy-registration state into Sleep (#8132)
  • tracing: remove unnecessary span clone (#8126)

Fixed

  • io: do not treat zero-length reads as EOF in Chain (#8251)
  • net: use getpeereid for QNX peer credentials (#8270)
  • runtime: avoid illegal state in FastRand (#8078)
  • sync: wake mpsc receiver when a queued reserve[_many] returns permits (#8260)
  • taskdump: skip double wake on Trace::capture/Trace::trace_with (#8043)
  • time: avoid stack overflow in runtime constructor (#8093)

... (truncated)

Commits

Updates syn from 2.0.118 to 3.0.3

Release notes

Sourced from syn's releases.

3.0.3

  • Documentation improvements

3.0.2

3.0.1

3.0.0

This release contains adjustments to the syntax tree to account for ongoing Rust language development from the 3 years since syn 2.0.0 and to anticipate some in-flight Rust language RFCs.

These include: default values in fields, pinned type sugar, raw lifetimes, generator blocks and functions, unnamed enum variants, attributes in tuple types and tuple patterns, named arguments in parenthesized generic argument lists, lightweight clones, const traits, const function pointers, mutability restricted fields, supertrait auto implementation, final associated functions, trait implementability restrictions, const blocks in path arguments, item-level const blocks, return type notation, never patterns, function delegation, mutable by-reference bindings, in-place initialization, field projections, explicitly dyn-compatible traits, view types, file-level frontmatter, generic const arguments, guard patterns, lazy type aliases, explicitly safe foreign items, super let, unsafe fields, pattern types, heterogeneous try-blocks, function contracts, async function trait bounds, static closure coroutine syntax, unsafe binder types, move expressions, for-await loops, and postfix keywords.

Breaking changes

Modifiers

To reserve more room for language evolution, there are 10 new non-exhaustive structs in the syntax tree having the following commonality:

  • Name ending in Modifiers. {BlockModifiers, ClosureModifiers, ConstModifiers, FieldModifiers, FnModifiers, ImplModifiers, LocalModifiers, TraitBoundModifiers, TraitModifiers, TypeModifiers}

  • Each implements Default. The default value is guaranteed to comprise no tokens.

  • Non-exhaustive. Can only be instantiated by Syn's parser or by creating and then mutating ▁▁Modifiers::default().

  • Does not implement Parse. When parsing, they are parsed by the enclosing syntax tree node.

  • Does not implement ToTokens. In some cases the syntax that these nodes might hold in the future is not necessarily contiguous tokens.

  • Provides .require_empty() -> Result<()> which returns a meaningfully spanned error if the modifiers are different from the empty default. This enables a caller to reject syntax it does not recognize without knowing what that syntax may be.

Types

  • Type::BareFn has been renamed to Type::FnPtr to mirror the compiler's terminology. Together with this, BareVariadic is renamed to FnPtrVariadic.

  • The mutually exclusive const_token and mutability fields of Type::Ptr have been unified into an enum of type PointerMutability, which was already previously used by Expr::RawAddr.

  • Every Type variant now holds attributes, which can represent the attributes of element types inside a tuple type, or attributes for a function return type.

  • BareFnArg is renamed to NamedArg and is used in ParenthesizedGenericArguments, in addition to the existing use in Type::FnPtr.

Expressions

... (truncated)

Commits
  • 23dbaab Release 3.0.3
  • 16aad4e Merge pull request #2071 from dtolnay/compatibility
  • 42181b8 Add explanation of compatibility strategy
  • f3af08e Update test suite to nightly-2026-07-21
  • 88ee7be Release 3.0.2
  • 587bc20 Merge pull request #2070 from dtolnay/emptyrange
  • 96801f7 Allow Error::new_range at empty cursor range
  • 9dc16c9 Merge pull request #2069 from dtolnay/prevspan
  • 1db76b7 Align on using impl trait across all Error constructors
  • bfa1ebf Make Cursor::prev_span public
  • Additional commits viewable in compare view

Updates bstr from 1.12.3 to 1.13.0

Commits
  • 63c6578 1.13.0
  • 9cc49de api: add to_bstring(), as_bstring(), and as_bstring_mut() methods to `B...
  • 7105619 doc: fix typo "Use &BStr is useful because ..."
  • See full diff in compare view

Updates futures from 0.3.32 to 0.3.33

Release notes

Sourced from futures's releases.

0.3.33

  • Fix ReadLine's soundness issue regarding to exception safety. (#3020)
  • Fix unsound Send impl for IterPinRef and Iter. (#3003)
  • Fix stacked borrows violation in compat01as03 implementation. (#3012)
  • Fix memory leak in FuturesUnordered::IntoIter. (#3005)
  • Add portable-atomic-alloc feature and use it in FuturesUnordered. (#3007)
  • Re-export alloc::task::Wake. (#3010)
  • Update spin to 0.12. (#3014)
Changelog

Sourced from futures's changelog.

0.3.33 - 2026-07-18

  • Fix ReadLine's soundness issue regarding to exception safety. (#3020)
  • Fix unsound Send impl for IterPinRef and Iter. (#3003)
  • Fix stacked borrows violation in compat01as03 implementation. (#3012)
  • Fix memory leak in FuturesUnordered::IntoIter. (#3005)
  • Add portable-atomic-alloc feature and use it in FuturesUnordered. (#3007)
  • Re-export alloc::task::Wake. (#3010)
  • Update spin to 0.12. (#3014)
Commits
  • 89cc254 Release 0.3.33
  • cd9f5be ci: Update release workflow
  • d79a499 Resolve rustdoc::broken_intra_doc_links warning
  • 95bbcf8 Resolve rustdoc ambiguous link error
  • 303c165 Resolve rustdoc::redundant_explicit_links warning
  • f34e3f5 ci: Cleanup
  • 66591a2 Enable Miri for more tests
  • ab1072f Simplify target_has_atomic cfg in utility crates
  • cf5d23b Fix unsound compat01as03 implementation (fixes #2514) (#3012)
  • 8ae794f Add portable-atomic-alloc feature and use it in FuturesUnordered (#3007)
  • Additional commits viewable in compare view

Updates clap from 4.6.1 to 4.6.4

Release notes

Sourced from clap's releases.

v4.6.4

[4.6.4] - 2026-07-21

Internal

  • Update to syn v3

v4.6.3

[4.6.3] - 2026-07-20

Fixes

  • (derive) Allow "literal".function() as attribute values

v4.6.2

[4.6.2] - 2026-07-15

Fixes

  • (help) Say alias when there is only one
Changelog

Sourced from clap's changelog.

[4.6.4] - 2026-07-21

Internal

  • Update to syn v3

[4.6.3] - 2026-07-20

Fixes

  • (derive) Allow "literal".function() as attribute values

[4.6.2] - 2026-07-15

Fixes

  • (help) Say alias when there is only one
Commits
  • 87ec1ad chore: Release
  • 78f2529 docs: Update changelog
  • b61f270 Merge pull request #6369 from Metbcy/fix/zsh-completion-ordering
  • 74c6666 fix(complete): Keep zsh candidate order
  • d142d8f Merge pull request #6360 from epage/string
  • ba89563 style: Prefer explicit string operations
  • bea966e Merge pull request #6359 from epage/man
  • b811986 chore(man):Remove unused required-features
  • 0010bf2 Merge pull request #6358 from clap-rs/renovate/crate-ci-typos-1.x
  • bab9b24 chore(deps): Update compatible (dev) (#6357)
  • Additional commits viewable in compare view

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@dependabot
Bump the all-rust-dependencies group across 1 directory with 13 updates
efe62b5 
Bumps the all-rust-dependencies group with 13 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [anyhow](https://github.com/dtolnay/anyhow) | `1.0.103` | `1.0.104` |
| [camino](https://github.com/camino-rs/camino) | `1.2.4` | `1.2.5` |
| [noodles](https://github.com/zaeleus/noodles) | `0.112.0` | `0.113.0` |
| [serde](https://github.com/serde-rs/serde) | `1.0.228` | `1.0.229` |
| [serde_json](https://github.com/serde-rs/json) | `1.0.150` | `1.0.151` |
| [toml](https://github.com/toml-rs/toml) | `1.1.2+spec-1.1.0` | `1.1.3+spec-1.1.0` |
| [quote](https://github.com/dtolnay/quote) | `1.0.46` | `1.0.47` |
| [proc-macro2](https://github.com/dtolnay/proc-macro2) | `1.0.106` | `1.0.107` |
| [tokio](https://github.com/tokio-rs/tokio) | `1.52.3` | `1.53.1` |
| [syn](https://github.com/dtolnay/syn) | `2.0.118` | `3.0.3` |
| [bstr](https://github.com/BurntSushi/bstr) | `1.12.3` | `1.13.0` |
| [futures](https://github.com/rust-lang/futures-rs) | `0.3.32` | `0.3.33` |
| [clap](https://github.com/clap-rs/clap) | `4.6.1` | `4.6.4` |



Updates `anyhow` from 1.0.103 to 1.0.104
- [Release notes](https://github.com/dtolnay/anyhow/releases)
- [Commits](dtolnay/anyhow@1.0.103...1.0.104)

Updates `camino` from 1.2.4 to 1.2.5
- [Release notes](https://github.com/camino-rs/camino/releases)
- [Changelog](https://github.com/camino-rs/camino/blob/main/CHANGELOG.md)
- [Commits](camino-rs/camino@camino-1.2.4...camino-1.2.5)

Updates `noodles` from 0.112.0 to 0.113.0
- [Commits](zaeleus/noodles@noodles-0.112.0...noodles-0.113.0)

Updates `serde` from 1.0.228 to 1.0.229
- [Release notes](https://github.com/serde-rs/serde/releases)
- [Commits](serde-rs/serde@v1.0.228...v1.0.229)

Updates `serde_json` from 1.0.150 to 1.0.151
- [Release notes](https://github.com/serde-rs/json/releases)
- [Commits](serde-rs/json@v1.0.150...v1.0.151)

Updates `toml` from 1.1.2+spec-1.1.0 to 1.1.3+spec-1.1.0
- [Commits](toml-rs/toml@toml-v1.1.2...toml-v1.1.3)

Updates `quote` from 1.0.46 to 1.0.47
- [Release notes](https://github.com/dtolnay/quote/releases)
- [Commits](dtolnay/quote@1.0.46...1.0.47)

Updates `proc-macro2` from 1.0.106 to 1.0.107
- [Release notes](https://github.com/dtolnay/proc-macro2/releases)
- [Commits](dtolnay/proc-macro2@1.0.106...1.0.107)

Updates `tokio` from 1.52.3 to 1.53.1
- [Release notes](https://github.com/tokio-rs/tokio/releases)
- [Commits](tokio-rs/tokio@tokio-1.52.3...tokio-1.53.1)

Updates `syn` from 2.0.118 to 3.0.3
- [Release notes](https://github.com/dtolnay/syn/releases)
- [Commits](dtolnay/syn@2.0.118...3.0.3)

Updates `bstr` from 1.12.3 to 1.13.0
- [Commits](BurntSushi/bstr@1.12.3...1.13.0)

Updates `futures` from 0.3.32 to 0.3.33
- [Release notes](https://github.com/rust-lang/futures-rs/releases)
- [Changelog](https://github.com/rust-lang/futures-rs/blob/main/CHANGELOG.md)
- [Commits](rust-lang/futures-rs@0.3.32...0.3.33)

Updates `clap` from 4.6.1 to 4.6.4
- [Release notes](https://github.com/clap-rs/clap/releases)
- [Changelog](https://github.com/clap-rs/clap/blob/master/CHANGELOG.md)
- [Commits](clap-rs/clap@clap_complete-v4.6.1...clap_complete-v4.6.4)

---
updated-dependencies:
- dependency-name: anyhow
  dependency-version: 1.0.104
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-rust-dependencies
- dependency-name: camino
  dependency-version: 1.2.5
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-rust-dependencies
- dependency-name: noodles
  dependency-version: 0.113.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-rust-dependencies
- dependency-name: serde
  dependency-version: 1.0.229
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-rust-dependencies
- dependency-name: serde_json
  dependency-version: 1.0.151
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-rust-dependencies
- dependency-name: toml
  dependency-version: 1.1.3+spec-1.1.0
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-rust-dependencies
- dependency-name: quote
  dependency-version: 1.0.47
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-rust-dependencies
- dependency-name: proc-macro2
  dependency-version: 1.0.107
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-rust-dependencies
- dependency-name: tokio
  dependency-version: 1.53.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-rust-dependencies
- dependency-name: syn
  dependency-version: 3.0.3
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: all-rust-dependencies
- dependency-name: bstr
  dependency-version: 1.13.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-rust-dependencies
- dependency-name: futures
  dependency-version: 0.3.33
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-rust-dependencies
- dependency-name: clap
  dependency-version: 4.6.4
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-rust-dependencies
...

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