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cherry pick CI, pr into main_wo_rfpeptides - #2

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davidcjuergens wants to merge 5 commits into
main_wo_rfpeptidesfrom
fix_tests2
Open

cherry pick CI, pr into main_wo_rfpeptides#2
davidcjuergens wants to merge 5 commits into
main_wo_rfpeptidesfrom
fix_tests2

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Commits on Aug 2, 2025