Skip to content

Update normal allele range#303

Closed
strchive-bot wants to merge 2 commits into
mainfrom
FRAXE_AFF2-1
Closed

Update normal allele range#303
strchive-bot wants to merge 2 commits into
mainfrom
FRAXE_AFF2-1

Conversation

@strchive-bot

Copy link
Copy Markdown
Contributor

Name
Daniel Nilsson
Username
@dnil
Email
daniel.nilsson@ki.se

Description
Currently the normal max is at 39, reflecting e.g. GeneTests. But in practice this flags many normal individuals as intermediates for no apparent gain. Suggest updating to 69, from eyeballing https://pathstr.bioinf.be.

@strchive-bot strchive-bot added the locus-edit Locus edited from website form label Nov 28, 2025
@netlify

netlify Bot commented Nov 28, 2025

Copy link
Copy Markdown

Deploy Preview for strchive ready!

Name Link
🔨 Latest commit 4fdb780
🔍 Latest deploy log https://app.netlify.com/projects/strchive/deploys/69297af53c9c11000785ffa6
😎 Deploy Preview https://deploy-preview-303--strchive.netlify.app
📱 Preview on mobile
Toggle QR Code...

QR Code

Use your smartphone camera to open QR code link.

To edit notification comments on pull requests, go to your Netlify project configuration.

@hdashnow

hdashnow commented Dec 5, 2025

Copy link
Copy Markdown
Member

Hi @dnil, is there a publication for this threshold? We generally limit these changes to peer-reviewed or at least pre-printed findings. If not, maybe you could publish your findings?

@dnil

dnil commented Dec 9, 2025

Copy link
Copy Markdown

Ahh, I think I found it. It's a mismatch in locus definition for trgt vs for sizing PCR again. Seems we are getting counts for some nearby polymorphisms into the tally. Will try to update and tighten it a little.

@dnil

dnil commented Dec 9, 2025

Copy link
Copy Markdown

Yes. Suggest we close this one. See #309 instead.

@hdashnow

Copy link
Copy Markdown
Member

Closing in favour of #309

@hdashnow hdashnow closed this Jan 28, 2026
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

locus-edit Locus edited from website form

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants