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camsa2fasta error - scaffold extremity adjacent to more than one other scaffold #16

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@ElifKoeksoy

Hi aganezov,

Thanks for providing CAMSA! I could successfully merge scaffolds in several assemblies already. I have however encountered the following error for three different assemblies when using the command

~/camsa-env$ camsa_points2fasta.py --points M34_camsa_points --fasta M34.fna -o M34_merged.fasta

that I could not resolve myself:

2019-01-09 12:51:12,120 - CAMSA.utils.camsa_points2fasta - INFO - Starting the converting process 2019-01-09 12:51:12,120 - CAMSA.utils.camsa_points2fasta - INFO - Reading assembly points 2019-01-09 12:51:12,122 - CAMSA.utils.camsa_points2fasta - INFO - A total of 36 assembly points was obtained 2019-01-09 12:51:12,123 - CAMSA.utils.camsa_points2fasta - ERROR - Supplied assembly contained a conflict. 2019-01-09 12:51:12,123 - CAMSA.utils.camsa_points2fasta - ERROR - Scaffold Scaffold_27 by its extremity Scaffold_27t is reported as adjacent to more than one other scaffold's extremity.

How can I solve this? Looking forward to your response!

Best,
-Elif

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