GitHub - codeocean-nate/vcf-snpeff-processing: Preprocesses VCF files for clinical variant analysis using SnpEff (GRCh38.105). Annotates variants, extracts top-impact annotations, and outputs Parquet tables, indexed VCF.gz, and metadata JSON to /results/ for downstream workflows. R-based with SnpEff database, reference genome, and test data attached.

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Preprocesses VCF files for clinical variant analysis using SnpEff (GRCh38.105). Annotates variants, extracts top-impact annotations, and outputs Parquet tables, indexed VCF.gz, and metadata JSON to /results/ for downstream workflows. R-based with SnpEff database, reference genome, and test data attached.