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Iscat comp - #5

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cmanzo merged 36 commits into
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ISCATcomp
Jun 19, 2026
Merged

cmanzo merged 36 commits into
developfrom
ISCATcomp

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@cmanzo

@cmanzo cmanzo commented Jun 19, 2026

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giovannivolpe and others added 30 commits June 16, 2026 15:16
Updated Python version compatibility and improved text clarity.
…ch (DeepTrackAI#482)

* Update README (DeepTrackAI#442)

* Update README

Added links to the tutorials for creating custom scatterers.

* Update README

* Update README.md

---------

Co-authored-by: Alex <95913221+Pwhsky@users.noreply.github.com>

* Auto-update README-pypi.md

* Rename DTEx206_cell_counting.ipynb to DTEx215_cell_counting.ipynb

* Revert "Rename DTEx206_cell_counting.ipynb to DTEx215_cell_counting.ipynb"

This reverts commit 453a099.

* updated: DTEx215_cell_counting (DeepTrackAI#451)

* Add files via upload

* Update README.md

* renamed to DTEx215

* Auto-update README-pypi.md

* created optical, changed imports

* init

* u

* u

* bind optical submodules

* u

* dt_math

* issue with python > 3.12

* index order for compatibility with python 3.9

* imageio cleanup

* indexing

* verbose install

* force

* lightning check

* more checks

* roll back

* Rename DTEx206_cell_counting.ipynb to DTEx215_cell_counting.ipynb

* Revert "Rename DTEx206_cell_counting.ipynb to DTEx215_cell_counting.ipynb"

This reverts commit 453a099.

* updated: DTEx215_cell_counting (DeepTrackAI#451)

* Add files via upload

* Update README.md

* renamed to DTEx215

* moved tests, added cv2

* meshgrid indexing for torch

* solve issue with multiple volumes

solve issue with multiple volumes with different intensities or refractive indexes by introducing _merge_placed_volumes()

* test_dlcc corrected

* fix issue with Python 3.9

* u

* u

* u

* nu

* back

* nu

* back

* _pad_volume

* optics

* preserve autograd

* remove +=

* in-place index

* test

* tests

* u

* mie

* tests

* common_setup

* _asarray_vector

* _process_properties

* convert

* properties

* properties

* properties

* Revert "u"

This reverts commit 4f3bf3f.

* skip tests

* ok

* revert changes to properties

* u

* revert changes to mie

---------

Co-authored-by: Mirja Granfors <95694095+mirjagranfors@users.noreply.github.com>
Co-authored-by: Alex <95913221+Pwhsky@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Alex <lechal.pierre@gmail.com>
@cmanzo
cmanzo merged commit a229ff7 into develop Jun 19, 2026
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2 participants