Feature/incidence

.gitignore

@@ -1,6 +1,8 @@
 .Rproj.user
 .Rhistory
 .RData
+*\.RData
+*\.rds
 .Ruserdata
 lib/
 docs
@@ -12,3 +14,8 @@ inst/doc
 
 Rplots.pdf
 *.local.json
+.DS_Store
+Thumbs.db
+*\.txt
+*\.xlsx
+*\.csv

CLAUDE.md

@@ -56,7 +56,7 @@ quarto::quarto_render("vignettes/speed.qmd")  # render a vignette (Quarto, not k
 Code formatting is handled by [Air](https://posit-dev.github.io/air/) - see `air.toml` (80-col, 2-space indent).
 Per `CONTRIBUTING.md`, do **not** restyle code that is unrelated to your PR.
 
-User-facing changes should add a bullet to the top of `NEWS.md`.
+User-facing changes should add a bullet to the top of `NEWS.md`. Use headings Major Changes, Minor Changes and Bug Fixes to document changes appropriately. Link to an issue number or PR such as (#999) where relevant.
 
 ## Architecture
 

DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: speed
 Title: Generate Spatially Efficient Experimental Designs
-Version: 0.0.8
+Version: 0.0.9
 Authors@R: 
     c(person(given = "Sam",
              family = "Rogers",

NAMESPACE

@@ -9,6 +9,8 @@ export(calculate_balance_score)
 export(calculate_ed)
 export(calculate_efficiency_factor)
 export(calculate_nb)
+export(calculate_pair_incidence)
+export(calculate_position_incidence)
 export(create_pair_mapping)
 export(get_edges)
 export(get_vertices)

NEWS.md

@@ -1,3 +1,10 @@
+# speed 0.0.9
+
+## Major Changes
+
+- Added `calculate_pair_incidence()` to return a symmetric treatment × treatment matrix of neighbour-pair counts.
+- Added `calculate_position_incidence()` to return treatment × row/column position count matrices.
+
 # speed 0.0.8
 
 ## Major Changes