chore(main): release plotnado 0.3.1

[alsmith151]

🤖 I have created a release beep boop

0.3.1 (2026-05-27)

Features

• Add adjust_plot method to BedSimple for improved axis handling (f744510)
• Add autoscaling and autocoloring support to Figure class (54545d1)
• Add basic plotting and simple overlays example notebooks (7ca75d4)
• Add build_docs.yml for building documentation with GitHub Actions (e3efdcd)
• Add Docker definition for building and installing Plotnado with micromamba (c81eb65)
• add gene filtering functionality to Genes track and update documentation (6bee424)
• Add iced to dependencies in Docker definition for Plotnado (1315077)
• Add loguru to requirements.txt for improved logging capabilities (cfed464)
• add overlays notebook (8033d7a)
• add permissions for issues in release workflow (f7868eb)
• Add PlotNado documentation (d08b9f8)
• Add PlotNado documentation (8403280)
• Add pybedtools to requirements.txt for enhanced genomic data processing (1b903b8)
• Add pyranges to requirements.txt for enhanced genomic data handling (b3edb07)
• Add support for autocoloring of genes in Figure class (d5013f3)
• added genes track (94c891a)
• added hg38 genes (9b0211d)
• enhance autoscaling functionality and improve overlay track limits handling (800e26e)
• enhance gene label handling and update BigWig diff input types (edb6301)
• Enhance interval fetching and improve plot labeling in BedSimple and PlotGenes classes (91c9d25)
• Enhance interval fetching and improve plot labelling (421c89f)
• Figure: added autocolor feature (f733714)
• Introduce BedBasePlotnado class to enhance file handling (81ddf06)
• Introduce BedBasePlotnado class to enhance file handling in Genes class (256df8b)
• Update PlotNado installation instructions in index.md (f3380c8)
• Update plotnado.cli script path in pyproject.toml (aa93f52)
• Update y_label calculation in genes.py (3fcb7b3)
• Update y_label calculation in genes.py (266928f)

Bug Fixes

• Clean up whitespace and improve error handling in BedSimple (3cca4df)
• Clean up whitespace and improve error handling in BedSimple fetch_data method (e6b24c2)
• Correctly return intervals from fetch_data method in BedSimple (867d911)
• Correctly return intervals from fetch_data method in BedSimple class (6a26471)
• Import iced conditionally for ICE normalization method in MatrixCapcruncher (bad6836)
• Import iced conditionally for normalization method in MatrixCapcruncher (0fa542e)
• Update Genes class to inherit from BedBase instead of BedBasePlo… (a65ab38)
• Update Genes class to inherit from BedBase instead of BedBasePlotnado (296b3b7)

Documentation

• added basic example notebook (0bb719c)
• clean documentation and ensure examples render (#32) (cce6fbc)
• updated documentation (0aedbc6)

---

This PR was generated with Release Please. See documentation.

[codecov-commenter]

⚠️ Please install the to ensure uploads and comments are reliably processed by Codecov.

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 79.37%. Comparing base (f7868eb) to head (8e33d43).
❗ Your organization needs to install the Codecov GitHub app to enable full functionality.

Additional details and impacted files

@@           Coverage Diff           @@
##             main      #38   +/-   ##
=======================================
  Coverage   79.37%   79.37%           
=======================================
  Files          42       42           
  Lines        5589     5589           
=======================================
  Hits         4436     4436           
  Misses       1153     1153           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

[alsmith151]

🤖 Created releases:

• plotnado-v0.3.1

🌻