Add a tutorial on time-resolved TEM from molecular dynamics

docs/_toc.yml

@@ -44,6 +44,7 @@ parts:
         #- file: user_guide/tutorials/visualizations
         - file: user_guide/tutorials/core_loss
         - file: user_guide/tutorials/phonon_loss
+        - file: user_guide/tutorials/time_resolved
         #- file: user_guide/tutorials/custom_simulation_objects
         #- file: user_guide/tutorials/plasmons
     - file: user_guide/examples/examples

docs/references.bib

@@ -317,3 +317,18 @@ @article{brown_linear-scaling
   urldate = {2025-10-10},
   langid = {english},
 }
+
+@article{olajide_temporal_resolution,
+  title = {Temporal Resolution of {{In Situ TEM}} Limits the Characterization of Catalyst Site Dynamics},
+  author = {Olajide, Gbolagade and Maxson, Tristan and Szilv{\'a}si, Tibor},
+  year = {2025},
+  month = nov,
+  journal = {ACS Catalysis},
+  volume = {15},
+  number = {22},
+  pages = {18908--18916},
+  issn = {2155-5435},
+  doi = {10.1021/acscatal.5c05363},
+  urldate = {2026-09-17},
+  langid = {english},
+}

docs/user_guide/walkthrough/frozen_phonons.ipynb

@@ -51,6 +51,10 @@
     "\n",
     "```{note}\n",
     "Even though phonon scattering in reality is inelastic, the multislice simulation used with the frozen phonon model is fully elastic same as for the static case. This is an excellent approximation since the energy loss involved with phonon scattering is negligible compared to the primary beam energy.\n",
+    "```\n",
+    "\n",
+    "```{seealso}\n",
+    "The frozen phonon model describes fast vibrations around fixed equilibrium sites. Atoms that actually move between sites during the exposure, such as a diffusing adatom, are averaged over in the same way by using the snapshots of a molecular dynamics trajectory in place of the random displacements; see our [tutorial on time-resolved TEM](tutorials:time_resolved).\n",
     "```"
    ]
   },