forcing new taint on copy from

Author: arcuri82

core/src/main/kotlin/org/evomaster/core/problem/externalservice/httpws/service/HarvestActualHttpWsResponseHandler.kt

@@ -532,10 +532,11 @@ class HarvestActualHttpWsResponseHandler {
         try {
             val template = getACopyOfItsActualResponseIfExist(geneToMutate, probability)?.responseBody ?: return false
 
-            val v = ParamUtil.getValueGene(geneToMutate)
-            val t = ParamUtil.getValueGene(template)
+            val v = geneToMutate.getLeafGene()
+            val t = template.getLeafGene()
             if (v::class.java == t::class.java) {
                 v.copyValueFrom(t)
+                v.forceNewTaints()
                 return true
             } else if (v is StringGene) {
                 // add template as part of specialization

core/src/main/kotlin/org/evomaster/core/problem/rest/data/RestCallAction.kt

@@ -191,7 +191,9 @@ class RestCallAction(
                     For example, they could be a ChoiceGene when dealing with "examples" or Regex when having patterns
                     only defined on some endpoints
                  */
-                parameters[i].primaryGene().copyValueFrom(k.primaryGene())
+                val g = parameters[i].primaryGene()
+                g.copyValueFrom(k.primaryGene())
+                g.forceNewTaints()
             }
         }
     }

core/src/main/kotlin/org/evomaster/core/search/Individual.kt

@@ -527,7 +527,7 @@ abstract class Individual(
                       y !=x && !y.hasAnyBindingRelationship(x)
                }
            }){
-               errors.add("Taint id ${d.key} has duplicate genes that are not related}")
+               errors.add("Taint id ${d.key} has duplicate genes that are not related")
            }
         }
         return errors

core/src/main/kotlin/org/evomaster/core/search/action/Action.kt

@@ -79,11 +79,7 @@ abstract class Action(children: List<StructuralElement>) : ActionComponent(
 
     fun forceNewTaints(){
         seeTopGenes().forEach { g ->
-            g.flatView().forEach { r ->
-                if(r is TaintableGene && !r.isDependentTaint()){
-                    r.forceNewTaintId()
-                }
-            }
+            g.forceNewTaints()
         }
     }
 

core/src/main/kotlin/org/evomaster/core/search/gene/Gene.kt

@@ -15,6 +15,7 @@ import org.evomaster.core.Lazy
 import org.evomaster.core.problem.enterprise.EnterpriseIndividual
 import org.evomaster.core.problem.enterprise.SampleType
 import org.evomaster.core.search.RootElement
+import org.evomaster.core.search.gene.interfaces.TaintableGene
 import org.evomaster.core.search.gene.utils.GeneUtils
 import org.evomaster.core.search.gene.interfaces.WrapperGene
 import org.evomaster.core.search.service.SearchGlobalState
@@ -1133,6 +1134,14 @@ abstract class Gene(
     abstract fun unsafeCopyValueFrom(other: Gene): Boolean
 
 
+    fun forceNewTaints(){
+        flatView().forEach { r ->
+            if(r is TaintableGene && !r.isDependentTaint()){
+                r.forceNewTaintId()
+            }
+        }
+    }
+
     /**
      * Update current value of this gene, base on [other] gene.
      * If for any reason the update fails, there is not going to be any side-effects.

core/src/main/kotlin/org/evomaster/core/search/gene/wrapper/ChoiceGene.kt

@@ -209,6 +209,7 @@ class ChoiceGene<T>(
                 options even if not selected
              */
             val updated = g.copyValueFrom(x)
+            g.forceNewTaints()
             if(updated){
                 this.activeGeneIndex = i
                 return true