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52 changes: 52 additions & 0 deletions R/constants.R
Original file line number Diff line number Diff line change
Expand Up @@ -61,6 +61,58 @@ CONSTANTS_STATMODEL = list(
plot_type_qq_plot = "QQPlots" # QQPlots — matches MSstats::groupComparisonQCPlots(type = "QQPlots")
)

NAMESPACE_LOADPAGE = list(
bio = "BIO",
dda_dia = "DDA_DIA",
filetype = "filetype",
proceed1 = "proceed1",
big_file_diann = "big_file_diann",
big_diann_calculate_anomaly_scores = "big_diann_calculate_anomaly_scores",
big_diann_run_order_file = "big_diann_run_order_file",
diann_2plus = "diann_2plus",
intensity_column = "intensity_column",
q_val = "q_val",
q_cutoff = "q_cutoff",
mbr = "MBR",
diann_calculate_anomaly_scores = "diann_calculate_anomaly_scores",
diann_run_order_file = "diann_run_order_file",
big_file_spec = "big_file_spec",
label_free_type = "LabelFreeType",
calculate_anomaly_scores = "calculate_anomaly_scores",
m_score = "m_score",
which_proteinid = "which.proteinid",
diann_lf_options_panel = "diann_lf_options_panel",
diann_intensity_column_panel = "diann_intensity_column_panel",
qval_filter_panel = "qval_filter_panel",
qval_cutoff_panel = "qval_cutoff_panel",
qval_mbr_panel = "qval_mbr_panel",
sample_dda_description_panel = "sample_dda_description_panel",
sample_dia_description_panel = "sample_dia_description_panel",
sample_srm_prm_description_panel = "sample_srm_prm_description_panel",
label_free_type_selection_panel = "label_free_type_selection_panel",
standard_quant_upload_panel = "standard_quant_upload_panel",
standard_annot_upload_panel = "standard_annot_upload_panel",
msstats_regular_upload_panel = "msstats_regular_upload_panel",
msstats_ptm_upload_panel = "msstats_ptm_upload_panel",
skyline_upload_panel = "skyline_upload_panel",
ptm_fragpipe_upload_panel = "ptm_fragpipe_upload_panel",
maxquant_upload_panel = "maxquant_upload_panel",
ptm_uploads_panel = "ptm_uploads_panel",
ptm_maxquant_pgroup_panel = "ptm_maxquant_pgroup_panel",
ptm_metamorpheus_extras_panel = "ptm_metamorpheus_extras_panel",
ptm_fasta_id_column_panel = "ptm_fasta_id_column_panel",
ptm_mod_id_maxq_panel = "ptm_mod_id_maxq_panel",
ptm_mod_id_pd_panel = "ptm_mod_id_pd_panel",
ptm_mod_id_spec_panel = "ptm_mod_id_spec_panel",
dia_umpire_upload_panel = "dia_umpire_upload_panel",
label_free_options_panel = "label_free_options_panel",
openswath_mscore_panel = "openswath_mscore_panel",
openswath_mscore_cutoff_panel = "openswath_mscore_cutoff_panel",
summary_nonptm_panel = "summary_nonptm_panel",
summary_ptm_panel = "summary_ptm_panel",
tmt_options_ui = "tmt_options_ui"
)

NAMESPACE_EXPDES = list(
sidebar_controls = "sidebar_controls",
protein_select = "protein_select",
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