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Fix local test #21

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Merged
lgw2 merged 3 commits into from
Jun 22, 2026
Merged

Fix local test #21

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da46063
remove stray comment
lgw2 Jun 22, 2026
2a9b137
update data and tests for local stringdb
lgw2 Jun 22, 2026
9cb8342
remove duplicated string to hugo R script
lgw2 Jun 22, 2026
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6 changes: 0 additions & 6 deletions R/GatherPPIData.R
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Original file line number Diff line number Diff line change
Expand Up @@ -124,12 +124,6 @@ StandardizeGeneSymbols <- function(genes,
MakeDBInput <- function(gene.cccn.nodes, file.path.name = "db_nodes.txt") {
utils::write.table(unique(c(gene.cccn.nodes[[1]], gene.cccn.nodes[[2]])), file = file.path.name, row.names = FALSE, col.names = FALSE, quote = FALSE)
}
# Pulls nodenames from the gene.cccn
#
# This helper function pulls the gene names from the gene.cccn into a list 'nodenames'
#
# @param gene.cccn A matrix showing strength of relationships between proteins using the common clusters between the three distance metrics (Euclidean, Spearman, and Combined (SED))
# @return data frame of the names of the genes


#' Get STRINGdb PPI data from full local or live source
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