Popular repositories Loading

1. Multi-omics Multi-omics Public

   Intuitive guide to multi-omics integration with toy examples: supervised latent components (DIABLO), unsupervised shared/partial/unique structure (DIVAS), VAEs/conditional VAEs, and key baselines (…

   Python 81 16

2. Transcriptomics-extended Transcriptomics-extended Public

   Runnable R companion walkthrough for bulk RNA-seq analysis with the Bioconductor airway dataset.

   R 38 4

3. Causal-Microbiome-Omics Causal-Microbiome-Omics Public

   Plain-language guide to causal inference for microbiome & multi-omics: DAGs/backdoor, confounders vs mediators/colliders, causal mediation (ACME/ADE/Total), and Double Machine Learning (DML) with t…

   Python 18 3

4. Trhova.github.io Trhova.github.io Public

   Personal Next.js website for profile, publications, posts, resources, and CV.

   TypeScript 3

5. DTU_HPC_2026 DTU_HPC_2026 Public

   Intro guide to using DTU HPC, with LSF job scripts for metagenomics workflows using KneadData, MetaPhlAn, and HUMAnN.

   Python 2

6. Agent-assisted-systematic-review Agent-assisted-systematic-review Public

   Auditable pipeline for agent-assisted systematic review of microbiome interventions in metabolic disease.

   Python 1