Simulation of Phaeodactylum tricornutum growth in the Photobioreactor (PBR)

This repository refers to the base code of the publication:

Branco-Vieira, M., Caetano, N.S., Lima, A.R.J., Töpfer, N. (2023). Towards Multiscale Modeling to Predict Diatom Metabolites Production for Biofuels and High-Value Compounds. In: Caetano, N.S., Felgueiras, M.C. (eds) The 9th International Conference on Energy and Environment Research. ICEER 2022. Environmental Science and Engineering. Springer, Cham.

Description of the folders and files:

1_Model: The P. tricornutum model --iLB1034.json

2_Data: files to be used in the "photon uptake constraints"

3_Notebook: Jupyter Notebook containing the base code for simulating the P. tricornutum growth at the PBR

4_Requirements: requirements to set the virtual environment

License

Copyright (c) 2023 Springer Nature

"Reproduced with permission from Springer Nature"