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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@
"0_slide_title": " ",
"0_slide_body": " ",
"0_TextBox_0": "AI-based Segmentation in 3D Slicer",
"0_TextBox_1": "Sonia Pujol, Ph. D\nBrigham and Women's Hospital,\nHarvard Medical School\nBoston, MA",
"0_TextBox_1": "Sonia Pujol, Ph. D. \nBrigham and Women's Hospital,\nHarvard Medical School\nBoston, MA",
"0_TextBox_2": " ",
"0_TextBox_3": "Slicer Ribeirão Preto Workshop\nJune 30, 2025",
"1_slide_title": "",
Expand All @@ -16,11 +16,11 @@
"3_slide_title": "",
"3_slide_body": "",
"3_TextBox_0": "AI Terminology",
"3_TextBox_1": "A is an AI algorithm that was trained to perform a specific task (e.g. brain tumor segmentation model).\n\nThe Weights of an AI model are small numbers that determine how much importance the model gives to different image features.\n\nDuring the Training phase, a Model learns patterns from data labelled by experts and adjusts its weights to improve its predictions.\n\nDuring the Validation/Test phase, the model is evaluated on a separate set of data not used during the Training phase.\n\nDuring Inference, the model is applied to new datasets to perform the specific task it was trained for.",
"3_TextBox_1": "A Model is an AI algorithm that was trained to perform a specific task (e.g. brain tumor segmentation model).\n\nThe Weights of an AI model are small numbers that determine how much importance the model gives to different image features.\n\nDuring the Training phase, a model learns patterns from data labelled by experts and adjusts its weights to improve its predictions.\n\nDuring the Validation/Test phase, the model is evaluated on a separate set of data not used during the Training phase.\n\nDuring Inference, the model is applied to new datasets to perform the specific task it was trained for.",
"4_slide_title": "",
"4_slide_body": "",
"4_TextBox_0": "3D Slicer AI Workshop",
"4_TextBox_1": "This tutorial focuses on running inference tasks using various pretrained AI models for automated segmentation of anatomical and pathological structures.",
"4_TextBox_0": "3D Slicer AI Tutorial",
"4_TextBox_1": "This tutorial focuses on running inference tasks using various pre-trained AI models for automated segmentation of anatomical and pathological structures.",
"5_slide_title": "",
"5_slide_body": "",
"5_TextBox_0": "MONAIAuto3DSeg Slicer extension",
Expand All @@ -32,7 +32,7 @@
"7_slide_title": "",
"7_slide_body": "",
"7_TextBox_0": "Slicer AI Tutorial: Segmentation Tasks",
"7_TextBox_1": "Segmentation Task #1: Prostate.\n\n\nSegmentation Task #2: Brain Glioma.\n\n\nSegmentation Task #3: Whole Body Segmentation.",
"7_TextBox_1": "Segmentation Task #1: Prostate \n\n\nSegmentation Task #2: Brain Glioma \n\n\nSegmentation Task #3: Whole Body Segmentation",
"8_slide_title": "",
"8_slide_body": "",
"8_TextBox_0": "AI Segmentation Task #1: Prostate",
Expand All @@ -43,20 +43,20 @@
"10_slide_title": "",
"10_slide_body": "",
"10_Rectangle_0": "",
"10_TextBox_1": "Click on Add Data in the Welcome to Slicer Module\n\nClick on Choose Directory to Add and browse to the location of the Slicer datasets",
"10_TextBox_1": "Click on Add Data in the Welcome to Slicer module\n\nClick on Choose Directory to Add and browse to the location of the Slicer datasets\n\nSelect the dataset3_ProstateMRI and click on Open",
"11_slide_title": "",
"11_slide_body": "",
"11_TextBox_0": "Slicer loads the prostate MRI data set",
"11_TextBox_0": "Slicer loads the prostate MRI dataset",
"12_slide_title": "",
"12_slide_body": "",
"12_TextBox_0": "Click on Welcome to Slicer in the Modules' menu and browse to the category Segmentation\n\nSelec the MONAI Auto3DSeg module",
"12_TextBox_0": "Click on Welcome to Slicer in the Modules' menu and browse to the category Segmentation\n\nSelect the MONAIAuto3DSeg module",
"13_slide_title": "",
"13_slide_body": "",
"13_TextBox_0": "Enter the model's name Prostate in the Segmentation model menu",
"13_TextBox_1": "Select the model Prostate - Multisequence",
"14_slide_title": "",
"14_slide_body": "",
"14_TextBox_0": "Enter the Input T2 volume msd-prostate-01-adc and the Input ADC volume msd-prostate-01-adc.",
"14_TextBox_0": "Enter the Input T2 volume msd-prostate-01-t2 and the Input ADC volume msd-prostate-01-adc",
"14_TextBox_1": "Click on Create new segmentation on Apply",
"15_slide_title": "",
"15_slide_body": "",
Expand All @@ -74,14 +74,15 @@
"19_slide_title": "",
"19_slide_body": "",
"19_Rectangle_0": "",
"19_TextBox_1": "Click on Add Data in the Welcome to Slicer Module\n\nClick on Choose File(s) to Add and browse to the loccation of the Slicer datasets",
"19_TextBox_1": "Click on Add Data in the Welcome to Slicer module\n\nClick on Choose File(s) to Add and browse to the location of the Slicer datasets\n\nIn the subdirectory dataset4_BrainMRI_Glioma, select the four datasets
BraTS-GLI-00006-t1c.nii.gz, BraTS-GLI-00006-t1n.nii.gz, BraTS-GLI-00006-t2f.nii.gz, BraTS-GLI-00006-t2w.nii.gz\n\n\Click on Open",
"20_slide_title": "",
"20_slide_body": "",
"20_TextBox_0": "Select the module MONAIAuto3DSeg and enter the model's name Brain Tumor Segmentation in the Segmentation model menu",
"20_TextBox_1": "Select the model Brain Tumor Segmentation (BRATS) GLI",
"21_slide_title": "",
"21_slide_body": "",
"21_TextBox_0": "Enter the input volumes as follows:\n\nInput T2F volume: BraTS-GLI_00005-000-t12f\nInput T1C volume: BraTS-GLI_00005-00-t1c\nInput T1N volume: BraTS-GLI_00005-000-t1n\nInput T2W volume: BraTS-GLI_00005-000-t2w\n\n\nClick on Create new Segmentation on Appply\n\nClick on Apply to start the segmentation",
"21_TextBox_0": "Enter the input volumes as follows:\n\nInput T2F volume: BraTS-GLI_00005-000-t2f\nInput T1C volume: BraTS-GLI_00005-000-t1c\nInput T1N volume: BraTS-GLI_00005-000-t1n\nInput T2W volume: BraTS-GLI_00005-000-t2w\n\n\nClick on Create new Segmentation on Apply\n\nClick on Apply to start the segmentation",
"22_slide_title": "",
"22_slide_body": "",
"22_Rectangle_0": "",
Expand All @@ -102,20 +103,20 @@
"26_TextBox_0": "In the Add DICOM Data module, select the Patient patient1 and double click onthe image CT_Thorax_Abdomen to load it in Slicer",
"27_slide_title": "",
"27_slide_body": "",
"27_TextBox_0": "Select the module MONAIAuto3DSeg and enter the model's name Whole Body Segmentation in the Segmentation model menu",
"27_TextBox_0": "Select the module MONAIAuto3DSeg and enter the model's name Whole Body Segmentation in the Segmentation model menu",
"27_TextBox_1": "Select the model Whole Body Segmentation TS1-quick",
"28_slide_title": "",
"28_slide_body": "",
"28_TextBox_0": "Select the input Volume 6: CT_Thorax_Abdomen,\n\nClick on Create new Segmentation on Apply\n\nClick on Apply to start the segmentation",
"28_TextBox_0": "Select the input Volume 6:CT_Thorax_Abdomen,\n\nClick on Create new Segmentation on Apply\n\nClick on Apply to start the segmentation",
"29_slide_title": "",
"29_slide_body": "",
"29_TextBox_0": "Slicer displays the results of the IA-based segmentation using the Whole Body Segmentation TS1-quick",
"29_TextBox_0": "Slicer displays the results of the AI-based segmentation using the Whole Body Segmentation TS1-quick",
"30_slide_title": "",
"30_slide_body": "",
"30_TextBox_0": "Conclusion",
"30_TextBox_1": "The 3D SlicerMONAIAuto3DSeg extension provides fast AI-based segmentation of anatomical and pathological structures.\n\n\nThe module can run on standard laptop and desktop computers with no GPU.",
"30_TextBox_1": "The 3D Slicer MONAIAuto3DSeg extension provides fast AI-based segmentation of anatomical and pathological structures.\n\n\nThe module can run on standard laptop and desktop computers with no GPU.",
"31_slide_title": " ",
"31_slide_body": " ",
"31_TextBox_0": "Acknowledgements",
"31_TextBox_1": "The 3D Slicer internationalization project and the 3D Slicer for Latin America project have been made possible by two CZI Essential Open Source Software for Science (EOSS cycle 4 & 5) grants."
"31_TextBox_1": "The 3D Slicer internationalization project and the 3D Slicer for Latin America project have been made possible through funding by the Chan Zuckerberg Initiative."
}