Skip to content

fracatlas tutorial giving error on training (DAT-1094) #152

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
luandalmazo merged 1 commit into from
Aug 31, 2026
Merged

fracatlas tutorial giving error on training (DAT-1094) #152

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
32 changes: 26 additions & 6 deletions notebooks/06_end_to_end/slice_based/01_fracatlas_classification.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -54,14 +54,14 @@
},
{
"cell_type": "code",
"execution_count": 1,
"execution_count": 5,
"id": "734f7a66",
"metadata": {},
"outputs": [],
"source": [
"from datamint import Api\n",
"\n",
"PROJECT_NAME = \"FracAtlas\"\n",
"PROJECT_NAME = \"ClassificationTest\"\n",
"api = Api()"
]
},
Expand Down Expand Up @@ -106,10 +106,29 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 8,
"id": "bb794bc8",
"metadata": {},
"outputs": [],
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"INFO:datamint.dataset.factory:Detected resource type 'image'; using ImageDataset.\n",
"INFO:datamint.dataset.base:Allowing external image label '('has_fracture', 'no')' not in project specs.\n",
"INFO:datamint.dataset.base:Allowing external image label '('has_fracture', 'yes')' not in project specs.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"train : 3268 resources\n",
"val : 408 resources\n",
"test : 409 resources\n"
]
}
],
"source": [
"from datamint.dataset import build_dataset\n",
"\n",
Expand All @@ -121,7 +140,7 @@
")\n",
"\n",
"parts = dataset.split(train=0.8, val=0.1, test=0.1, seed=123)\n",
"parts.save() \n",
"parts.save(force=True) \n",
"\n",
"for name, ds in parts.items():\n",
" print(f'{name:6s}: {len(ds):4d} resources')"
Expand Down Expand Up @@ -165,8 +184,9 @@
" project=PROJECT_NAME,\n",
" image_size=384,\n",
" batch_size=8,\n",
" max_epochs=10,\n",
" max_epochs=3,\n",
" accelerator='auto',\n",
" pretrained=False,\n",
" # model_name='MyModelName' # defaults to project name\n",
")\n",
"\n",
Expand Down
Loading