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3 changes: 3 additions & 0 deletions datamint/mlflow/__init__.py
Original file line number Diff line number Diff line change
@@ -1,5 +1,6 @@
# Monkey patch mlflow.tracking._tracking_service.utils.get_tracking_uri
import logging
import os
from functools import wraps
from typing import TYPE_CHECKING

Expand All @@ -9,6 +10,8 @@

_LOGGER = logging.getLogger(__name__)

os.environ.setdefault('MLFLOW_ENABLE_ARTIFACTS_PROGRESS_BAR', 'false')

# Store reference to original function
_original_get_tracking_uri = mlflow_utils.get_tracking_uri
_SETUP_CALLED_SUCCESSFULLY = False
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3 changes: 0 additions & 3 deletions notebooks/06_end_to_end/full_3d/01_synapse_unetrpp.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -159,9 +159,6 @@
"metadata": {},
"outputs": [],
"source": [
"import os\n",
"\n",
"os.environ['MLFLOW_ENABLE_ARTIFACTS_PROGRESS_BAR'] = 'false'\n",
"\n",
"from datamint.lightning import UNETRPPTrainer\n",
"\n",
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3 changes: 0 additions & 3 deletions notebooks/06_end_to_end/full_3d/02_synapse_nnunet.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -187,9 +187,6 @@
"metadata": {},
"outputs": [],
"source": [
"import os\n",
"\n",
"os.environ['MLFLOW_ENABLE_ARTIFACTS_PROGRESS_BAR'] = 'false'\n",
"\n",
"from datamint.lightning import NNUNetTrainer\n",
"\n",
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Original file line number Diff line number Diff line change
Expand Up @@ -158,12 +158,9 @@
"metadata": {},
"outputs": [],
"source": [
"import os\n",
"\n",
"from datamint.lightning import EfficientNetV2Trainer\n",
"\n",
"os.environ['MLFLOW_ENABLE_ARTIFACTS_PROGRESS_BAR'] = 'false'\n",
"\n",
"trainer = EfficientNetV2Trainer(\n",
" project=PROJECT_NAME,\n",
" image_size=384,\n",
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12 changes: 0 additions & 12 deletions notebooks/06_end_to_end/slice_based/02_busi_segmentation.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -187,12 +187,8 @@
"metadata": {},
"outputs": [],
"source": [
"import os\n",
"\n",
"from datamint.lightning import DeepLabV3PlusTrainer\n",
"\n",
"os.environ['MLFLOW_ENABLE_ARTIFACTS_PROGRESS_BAR'] = 'false'\n",
"\n",
"trainer = DeepLabV3PlusTrainer(\n",
" project=PROJECT_NAME,\n",
" image_size=256,\n",
Expand All @@ -218,12 +214,8 @@
"metadata": {},
"outputs": [],
"source": [
"import os\n",
"\n",
"from datamint.lightning import UNetPPTrainer\n",
"\n",
"os.environ['MLFLOW_ENABLE_ARTIFACTS_PROGRESS_BAR'] = 'false'\n",
"\n",
"trainer = UNetPPTrainer(\n",
" project=PROJECT_NAME,\n",
" image_size=256,\n",
Expand All @@ -249,12 +241,8 @@
"metadata": {},
"outputs": [],
"source": [
"import os\n",
"\n",
"from datamint.lightning import TransUNetTrainer\n",
"\n",
"os.environ['MLFLOW_ENABLE_ARTIFACTS_PROGRESS_BAR'] = 'false'\n",
"\n",
"trainer = TransUNetTrainer(\n",
" project=PROJECT_NAME,\n",
" # image_size is omitted \u2014 TransUNetTrainer always uses 224\u00d7224.\n",
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3 changes: 0 additions & 3 deletions notebooks/06_end_to_end/slice_based/03_bccd_detection.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -150,12 +150,9 @@
"metadata": {},
"outputs": [],
"source": [
"import os\n",
"\n",
"from datamint.lightning import YOLOXTrainer\n",
"\n",
"os.environ[\"MLFLOW_ENABLE_ARTIFACTS_PROGRESS_BAR\"] = \"false\"\n",
"\n",
"trainer = YOLOXTrainer(\n",
" project=PROJECT_NAME,\n",
" model_size=\"s\", # nano / tiny / s / m / l / x\n",
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