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imported_from not working when uploading a volume segmentation (DAT-852) #125

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Merged
luandalmazo merged 2 commits into from
Jul 27, 2026
Merged

imported_from not working when uploading a volume segmentation (DAT-852) #125

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8a2b8df
added new fields to _upload_volume_segmentation_a
luandalmazo Jul 27, 2026
cc4039e
removed author_email from upload
luandalmazo Jul 27, 2026
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10 changes: 4 additions & 6 deletions datamint/api/endpoints/annotations_api.py
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Original file line number Diff line number Diff line change
Expand Up @@ -283,7 +283,6 @@ async def _upload_segmentations_async(self,
file_path=file_path,
name=name,
imported_from=imported_from,
author_email=author_email,
worklist_id=worklist_id,
model_id=model_id,
transpose_segmentation=transpose_segmentation,
Expand Down Expand Up @@ -602,7 +601,6 @@ def upload_volume_segmentation(self,
file_path: str | Path | np.ndarray,
name: dict[int, str] | None = None,
imported_from: str | None = None,
author_email: str | None = None,
worklist_id: str | None = None,
model_name: str | None = None,
transpose_segmentation: bool = False,
Expand All @@ -622,7 +620,6 @@ def upload_volume_segmentation(self,
name: Mapping of integer label values to segmentation names.
Example: {1: 'liver', 2: 'tumor'}
imported_from: The imported from value.
author_email: The author email.
worklist_id: The annotation worklist unique id.
model_name: The AI model name.
transpose_segmentation: Whether to transpose the segmentation before uploading.
Expand Down Expand Up @@ -678,7 +675,6 @@ def upload_volume_segmentation(self,
file_path=file_path,
name=name,
imported_from=imported_from,
author_email=author_email,
worklist_id=worklist_id,
model_id=model_id,
transpose_segmentation=transpose_segmentation,
Expand Down Expand Up @@ -905,7 +901,6 @@ async def _upload_volume_segmentation_async(self,
file_path: str | np.ndarray,
name: str | dict[int, str] | dict[tuple, str] | None,
imported_from: str | None = None,
author_email: str | None = None,
worklist_id: str | None = None,
model_id: str | None = None,
transpose_segmentation: bool = False,
Expand All @@ -920,7 +915,6 @@ async def _upload_volume_segmentation_async(self,
file_path: Path to segmentation file or numpy array.
name: The name of the segmentation (string only for volumes).
imported_from: The imported from value.
author_email: The author email.
worklist_id: The annotation worklist unique id.
model_id: The model unique id.
transpose_segmentation: Whether to transpose the segmentation.
Expand Down Expand Up @@ -959,6 +953,8 @@ async def _upload_volume_segmentation_async(self,
form.add_field('annotation_worklist_id', worklist_id)
if source is not None:
form.add_field('source', source)
if imported_from is not None:
form.add_field('imported_from', imported_from)
form.add_field('segmentation_map', json.dumps(name), content_type='application/json')

try:
Expand Down Expand Up @@ -994,6 +990,8 @@ async def _upload_volume_segmentation_async(self,
form.add_field('annotation_worklist_id', worklist_id)
if source is not None:
form.add_field('source', source)
if imported_from is not None:
form.add_field('imported_from', imported_from)
if name is not None:
form.add_field('segmentation_map', json.dumps(name), content_type='application/json')

Expand Down
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