Fix/empty tags yaml#9
Merged
Robbie1977 merged 18 commits intoJun 28, 2026
Merged
Conversation
…p-fixes Anatomy diagrams: post-merge follow-up fixes
Static audit after the previous follow-up still flagged three pairwise rect overlaps on Schlegel Fig 1: AL x ORN 30x20 px overlap (AL covered the ORN cell drawing). AL x ALLN 15x5 px overlap (ALLN y2 reached into AL y1). mPN x LHN 5x20 px overlap (LHN x2 reached into mPN x1). These were missed by the previous TL/centre/BR hit-test because the overlap sits in the body of the rect, not at probed corners. Two changes: 1. Reorder the AL/ALLN/ORN cluster so the cell-type rects come before the region rect. AL is a brain region; ORN and ALLN are cell-type drawings positioned inside the AL region in the schematic, so their rects necessarily overlap the AL rect. Per HTML5, the first matching <area> in tree order wins, so putting cell types before the region makes the visible cells route to their own term while the rest of AL still routes to AL. 2. Trim ALLN.y2 from 260 -> 254 (one below AL.y1=255) so the small geometric overlap with AL is gone. Trim LHN.x2 from 85 -> 79 (one below mPN.x1=80) for the same reason, and reorder LHN before mPN. After this commit static audit reports a single residual geometric overlap (ORN x AL, 30x20 px); it is intentional, resolved by ordering, and documents the cell-inside-region layout faithfully.
OCR pass with Tesseract on each natural-resolution figure surfaced visible
text labels that sit just below the cell-drawing rects and were therefore
unclickable.
Two changes:
1. Hulse Fig 1 (panel C): the AB(R) / AB(L) text labels are at displayed
y~736-751 in panel C, well below the existing rects at y=590-625 that
cover the AB region drawings. Add two new rects at the label
positions, linking the text labels to the same per-side asymmetrical
body classes (FBbt_00051240 right, FBbt_00051239 left).
2. Aso 2014a Fig 10 (panels D, E, F): the existing MBON panel rects end
at y=770, but the panel labels ('MBON-y3 (1)', 'MBON-y3b'1 (1)',
'MBON-y2a'1 (2)', 'MBON-y1pedc>a/B (1)') sit at displayed y~842-934.
Extend each bottom-row panel rect's y2 to cover the text label below
the cell drawing:
MBON-y3 y2 770 -> 890
MBON-y3b'1 y2 770 -> 890
MBON-y2a'1 y2 770 -> 940
MBON-y1pedc>a/B y2 770 -> 940
Static audit after these changes: zero new overlaps (Hulse 28 areas,
Aso unchanged at 45). The Schlegel ORN x AL geometric overlap from the
previous commit remains intentional and ordered.
…orrect IP language, link to cookies page Privacy Shield was invalidated by CJEU Schrems II (July 2020) and replaced by the EU-U.S. Data Privacy Framework in July 2023 (Commission Implementing Decision (EU) 2023/1795). The 'IP address (anonymized)' line was incorrect for GA4, which transiently uses IP for geolocation and discards it rather than anonymising in the GA-UA sense. Server-log paragraph added to declare that container logs are ephemeral and not persisted.
…ldwide users VFB has a worldwide user base of Drosophila researchers; the SensusAccess document conversion service is only available to UoE staff and students and so is unhelpful to most. The AbilityNet 'My Computer My Way' link above already covers generic browser/OS accessibility customisation for any user.
Cite McLachlan et al. (2026), bioRxiv (doi:10.64898/2026.06.16.732577), and summarise the 30-task benchmark (25/30 MCP vs 14/30 web vs 2/30 bare; 89% vs 11% on quantification tasks). Re-date the post to 2026-06-21 so the preprint announcement surfaces in the news feed.
A term with an empty Tags list still had its ID-prefix tag appended onto
an empty CSV string, producing "tags: [,VFB]". The leading comma is an
empty flow-sequence node, which go-yaml rejects ("did not find expected
node content"), failing the Hugo build on VFB_00017893_v8.md.
Build the tag list properly and drop empty entries before joining.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.