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Add GIDE use case - #541

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stain merged 4 commits into
ResearchObject:mainfrom
lubianat:main
Sep 24, 2026
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stain merged 4 commits into
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@lubianat

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Closes #536

This is a draft PR for validating the overall structure in principle before expanding on the paragraphs.

pinging @sherwoodf and @kkyoda

@elichad would something like this work?

@elichad
elichad self-requested a review May 27, 2026 14:54

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@lubianat sorry for the delay. this structure looks overall good to me, I've added a few comments with additional suggestions

Comment thread docs/pages/use_cases/gide.md Outdated
Comment thread docs/pages/use_cases/gide.md Outdated
Comment thread docs/pages/use_cases/gide.md Outdated

[What GIDE is]

[How detached RO-Crates are being used in GIDE]

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in addition to this you could include: why were RO-Crates chosen for GIDE?

```

```
## Resources

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is there any way for people to get involved in GIDE and contribute to further development? if so you could include it here

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That's being worked out now as the project moves from funded to community-driven mode. We'll update ASAP.

Comment thread docs/pages/use_cases/gide.md Outdated
https://github.com/German-BioImaging/gide-data-deliverable/


We are using the RO-Crate structure to harmonize metadata for https://www.gide-project.org/portal

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this would be good to highlight further up! Maybe in an "Applications" or "Next Steps" section above Resources?

@joshmoore

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I stole @lubianat for EU deadlines. 🙈 We'll get back to this ASAP.

@elichad

elichad commented Jul 28, 2026

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Nudging - @joshmoore @lubianat when will you be able to get back to this? (after the summer is ok)

@lubianat

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@elichad thank you for the nudge. I am back from summer time off (well, technically winter time off :) )

I'll get back to it later this week. We have published the reports on Zenodo, so there will be a few more links to add

lubianat and others added 2 commits July 29, 2026 15:50
Co-authored-by: Eli Chadwick <eli.chadwick@manchester.ac.uk>
Adds a basic overview of the usage of RO-Crates in GIDE, with links to documents with the extra information.
@lubianat

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I've added some things there! Still more to add.

@lubianat lubianat changed the title Add scaffold for gide use case Add GIDE use case Sep 24, 2026
@lubianat
lubianat marked this pull request as ready for review September 24, 2026 18:15
@lubianat

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I have been terrible in getting this done, I am so sorry @elichad ! But I think I cannot add much more than what is there for now.

We are still working with RO-Crate for continuations of GIDE (slowly! many projects 😬 )

Pinging @kkyoda and @sherwoodf in case there is anything else to add.

Also BioImage Archive (@matthewh) is doing some interesting work on RO-Crate on the BioImage Archive that, for what I know, go beyond what we did for GIDE.

@matthewh

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@lubianat I am? Sweet! That's news to me! 🤣 I think you have the wrong matthewh.

@stain

stain commented Sep 24, 2026

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Think this looks very good, happy to add now and then you can fix with additional PRs? I added BIA validator tool to https://www.researchobject.org/ro-crate/tools as well.

@stain
stain merged commit ba0ef9f into ResearchObject:main Sep 24, 2026
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@stain

stain commented Sep 24, 2026 •

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Live on https://www.researchobject.org/ro-crate/gide - thank you @lubianat !!

@lubianat

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@lubianat I am? Sweet! That's news to me! 🤣 I think you have the wrong matthewh.

lol! sorry, it is @matthewh-ebi who has been doing RO-Crate in BIA. But I guess feel free to join the pack 😅

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Use Case: Global Image Data Ecosystem

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