CAPASYDIS (Cartesian Projections of Asymmetric Distances)

DESCRIPTION

This repository includes the workflow and scripts used to analyze the NR99 dataset presented in the study. The repository is organised as follows:

• R/
  Implementation in R of the CAPASYDIS main concepts and calculations.
• Golang/
  Implementation in Golang of the CAPASYDIS workflow.
• JavaScript/
  Visualization using D3.js and Three.js.
• NR99/
  Workflow and scripts used for the NR99 analyses
• M10bases/
  Workflow and scripts used for the analysis of the M10bases dataset (simulation of a fully-mutated 10-base long sequence)

ADDITIONAL LINKS

Software

• 1st release: https://doi.org/10.5281/zenodo.17061848

Datasets

• Multiple sequence alignment (MSA) of NR99 after applying CAPASYDIS build_axes: https://doi.org/10.5281/zenodo.17055348
• Output file from build_axes v0.1.8: https://zenodo.org/records/17055026

Movies of NR99 analyses

• Three_domains_plotly: https://zenodo.org/records/17049073
• Three domains_polygon_plotly: https://zenodo.org/records/17049153
• Seqverse of Archaea: https://zenodo.org/records/17049195
• Seqverse of Bacteria: https://zenodo.org/records/17049222
• Seqverse of Eukaryota: https://zenodo.org/records/17049247

Associated study
https://www.biorxiv.org/content/10.1101/2025.09.04.674223v2