Add full Python example

[acoussat]

Add a new Python example that illustrate the full reconstruction workflow, from the GATE simulation until the final FDK reconstruction.

This is the sibling PR of OpenGATE/opengate#895. I think it should be merged after OpenGATE/opengate#895 (maybe even after it makes it to a GATE release?).

Perhaps now would be a good time to add the mechanisms to execute examples during the CI, like it is done in RTK. @axel-grc would that be a lot of work? Would you have time to have a look into it? It would probably be much faster for your to do it than for me.

Also, do we want to add the source code directly into the documentation, as it is done in RTK?

Final question, do we want the same example implemented in bash? Could be useful in the documentation.

[SimonRit]

Add a new Python example that illustrate the full reconstruction workflow, from the GATE simulation until the final FDK reconstruction.

This is the sibling PR of OpenGATE/opengate#895. I think it should be merged after OpenGATE/opengate#895 (maybe even after it makes it to a GATE release?).

After it's merged, not after it makes it to a GATE release as it's likely in a long time (https://github.com/OpenGATE/openGate/tags).

Perhaps now would be a good time to add the mechanisms to execute examples during the CI, like it is done in RTK. @axel-grc would that be a lot of work? Would you have time to have a look into it? It would probably be much faster for your to do it than for me.

Yes

Also, do we want to add the source code directly into the documentation, as it is done in RTK?

Yes, what do you think?

Final question, do we want the same example implemented in bash? Could be useful in the documentation.

Yes but can be a follow-up PR.

[SimonRit]

Perhaps now would be a good time to add the mechanisms to execute examples during the CI, like it is done in RTK. @axel-grc would that be a lot of work? Would you have time to have a look into it? It would probably be much faster for your to do it than for me.

I would suggest to avoid the generation of the data in this full example at testing. This could be done by downloading the data from Girder before running the full example and reading the files from disk if they already exist instead of running a Gate simu.

[acoussat]

Like for #81, we will run the GATE simulations directly on the self-hosted runner.

[acoussat]

OpenGATE/opengate#895 has been merged, this PR is therefore ready for review.

[SimonRit]

Two minor suggestions. Can you implement them before merging please?