QI2 lab

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1. mcSIM mcSIM Public

   Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

   Python 74 14

2. opm-v2 opm-v2 Public

   GUI and code for controlling an oblique plane microscope with projection imaging, sensorless adaptive optics, and integrated microfluidics.

   Python 4 1

3. I2K2022-SIM I2K2022-SIM Public

   I2K 2022 mcSIM tutorial

   Jupyter Notebook 6

4. opm-processing-v2 opm-processing-v2 Public

   Code for fast deconvolution, deskewing, registration, and fusion of OPM/diSPIM/LLSM data.

   Python 8

5. localize-psf localize-psf Public

   Code for localizing diffraction limited fluorescent objects and fitting the results to various different point-spread function (PSF) models.

   Python 6 2

6. merfish3d-analysis merfish3d-analysis Public

   GPU accelerated post-processing for 2D or 3D imaging spatial transcriptomics data.

   Python 10 4