splitpea

Docker container for Splitpea, a Python package for protein-protein interaction network rewiring analysis due to alternative splicing.

Paper: Zhong J, Cantu A, Dannenfelser R, Yao V. Splitpea: a Python package for protein-protein interaction network rewiring analysis due to alternative splicing. Bioinformatics. 2026;42(4):btag154. doi:10.1093/bioinformatics/btag154

Image

docker pull picotainers/splitpea:latest

Usage

Show command help:

docker run --rm picotainers/splitpea:latest --help

Run the CLI with your input files mounted into the container:

docker run --rm \
  -v "$PWD:/work" \
  -w /work \
  picotainers/splitpea:latest \
  run SE.MATS.JCEC.txt splitpea-output --differential_format rmats

Notes

• The image installs the published splitpea==0.1.1 package from PyPI.
• tabix is included because the upstream package requires the system tabix binary.
• Splitpea ships bundled reference resources for human and mouse analyses inside the Python package.