Issues

• Strand-specific methylation for hemimethylated CpGs

  PengNi/ccsmeth#59 · Filter by author rxw125 opened on Aug 4, 2026

• How to cite this tool?

  PengNi/ccsmeth#58 · Filter by author kuangzhuoran opened on Feb 2, 2026
  1

• RuntimeError: Expected tensor for argument #1 'indices' to have scalar type Long; but got torch.cuda.IntTensor instead (while checking arguments for embedding)

  PengNi/ccsmeth#57 · Filter by author kuangzhuoran opened on Nov 24, 2025

• Inquiry about model-related issues

  PengNi/ccsmeth#56 · Filter by author 197yu opened on Jun 11, 2025
  2

• 6mA, DNA adenine methylation_call_modification_frequency

  PengNi/ccsmeth#53 · Filter by author JP-Kim17 opened on Mar 7, 2025

• call_mod error in vision 0.5.0

  PengNi/ccsmeth#50 · Filter by author Songmg-Nwafu opened on Jun 6, 2024
  1

• Results based on count and model at the genome level is different

  PengNi/ccsmeth#49 · Filter by author HITzhongyu opened on Jan 29, 2024

• IndexError while running ccsmeth call_mods

  PengNi/ccsmeth#48 · Filter by author suvrathaprasad opened on Jan 10, 2024
  10

• Extract features file

  PengNi/ccsmeth#47 · Filter by author yycunc opened on Dec 19, 2023
  2

• Index error during align_reads in denovo mode

  PengNi/ccsmeth#46 · Filter by author Surbhigrewal opened on Dec 7, 2023
  2

• calling modifications on Pacbio Revio platform

  PengNi/ccsmeth#42 · Filter by author eric-hy opened on Aug 30, 2023
  1

• Training error

  PengNi/ccsmeth#41 · Filter by author RahelehSalehi opened on Aug 25, 2023

• Normalization

  PengNi/ccsmeth#39 · Filter by author RahelehSalehi opened on Aug 4, 2023
  1

• All reads are skipped/failed

  PengNi/ccsmeth#38 · Filter by author dnalinkbi opened on Jul 20, 2023
  4

• Modify the number of the layers

  PengNi/ccsmeth#36 · Filter by author RahelehSalehi opened on Jun 6, 2023
  2

• RuntimeError: cuDNN error: CUDNN_STATUS_EXECUTION_FAILED

  PengNi/ccsmeth#35 · Filter by author rl4940 opened on May 24, 2023
  2

• CCSMETH TRAIN

  PengNi/ccsmeth#33 · Filter by author olaraym opened on Apr 15, 2023
  3

• call strand-specific methylation

  PengNi/ccsmeth#32 · Filter by author PengNi opened on Apr 3, 2023

• Call modification

  PengNi/ccsmeth#31 · Filter by author RahelehSalehi opened on Mar 30, 2023
  25

• Extract features file structure

  PengNi/ccsmeth#30 · Filter by author RahelehSalehi opened on Mar 15, 2023
  15

• never ending run

  bug
  PengNi/ccsmeth#27 · Filter by author romaingroux opened on Nov 8, 2022
  2

• How to avoid call_freqb aggregate-mode using all cores automatically

  PengNi/ccsmeth#25 · Filter by author PengNi opened on Sep 29, 2022

• add submodule for model_ckpt downloading

  PengNi/ccsmeth#21 · Filter by author PengNi opened on Aug 16, 2022
  1