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merge - #1044
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streamentry wants to merge 36 commits into
Open
merge#1044streamentry wants to merge 36 commits into
streamentry wants to merge 36 commits into
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Merged after review: orphan lab-result joins are preserved as audit provenance and blocked from clean panel-specific calibration intake.
Expose the SRG- gate through a fail-closed CLI and Make review loop with tests and current-state documentation.
Adds optional certificate-hash identity checks to calibration intake. Mismatches and partial opted-in coverage fail closed; legacy panels remain explicitly unverified.
Keep failed-control observations auditable while excluding them from usable batch counts.
Add fail-closed optional panel identity checks to lab-result intake.
Merged after focused verification and CLEAR review comment. Full hook collection limitation was disclosed.
Expose the Phase Z ZAG- accountability gate through CLI and Make review workflows, with synchronized docs and fail-closed coverage.
Merged after focused review. Calendar validity remains metadata integrity only; it does not authenticate reviewers or establish scientific proof.
Bind domain review outcomes to the exact frozen package JSON when available.
Squash merge after focused verification and a non-approval automated review comment. Human review remains required for calibration-intake workflow impact; this change does not alter calibration policy or biological claims.
Reject impossible and non-canonical assay dates while preserving structured invalid-file provenance.
Expose the Phase Y YAG- gate through CLI and Make, with fail-closed tests and current-state documentation.
Expose the Phase AB ABAG- claim-integrity gate through CLI and Make with fail-closed integration coverage and synchronized handoff documentation.
* fix: block synthetic results from recalibration * fix: fail closed on malformed synthetic counts --------- Co-authored-by: OpenCode <opencode@example.com>
Synchronize the live pytest count with current metrics and harden the count regression parser.
Repairs synthetic calibration fixture/API drift while preserving fail-closed recalibration behavior.
Merged after self-review. Focused dry-run/API verification passed; repository-wide lint and the separate pre-push environment remain pre-existing limitations.
Separate clean summary metrics from stale-entry detail output.
Merged after scoped review. Local doc-link, targeted test, Ruff, and collection-alignment evidence passed; repository-wide pre-existing lint/test limitations remain documented in the PR.
Repoint active benchmark guidance to canonical metrics docs and guard the path with a regression test.
Use the V4 component-based review packet in the active Make workflow while preserving legacy compatibility. Missing components remain draft or incomplete.
Squash merge of the reviewed validation-boundary fix.
Merged after focused validation, PR-bundle verification, self-review, and documented baseline/environment caveats.
Portable V4 ERP schema now rejects contradictory component counts, missing lists, presence flags, and packet status. Focused schema tests and all 32 valid combinations pass; no biological or release claims changed.
Co-authored-by: OpenCode <opencode@example.com>
Keep Python and portable V4 packet validation fail-closed in sync.
Merged after self-review and focused verification. Full-suite limitations remain documented in the PR.
Add portable lab-result report schema and build-time validation while preserving audit duplicates and dry-lab limitations.
Fail closed on unlocked PRR records while preserving editable drafts; aligned tests and docs with the existing pre-experiment freeze contract.
Require and verify deterministic freeze_sha256 for locked PRR records while preserving editable draft construction.
Add a non-mutating helper to hash and lock PRR drafts, while rejecting silent re-freeze of already locked records.
Expose the canonical PRR lock and freeze-digest validation in the CLI with fail-closed exit codes and explicit distinction from the legacy pre-registration command.
Reject malformed PRR CLI field types with structured input errors while preserving valid and semantic-invalid exit behavior.
Reject malformed selection and amendment list entries as structured PRR CLI input errors.
Signed-off-by: j <hong@cloudjetkpi.com>
…s-202610 docs: maintain AI engineering guidance with monthly evidence reviews
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Description
Change class
See
docs/getting-started/MAINTAINER_GUIDE.md.Type of change
Safety impact
Claim discipline
docs/evidence/PROOF_LADDER.mdBaseline and benchmark discipline
Required for scorer, predictor, simulator, ranking, calibration, active-learning, or benchmark changes.
docs/evidence/METRICS_CURRENT.mdupdated if metrics changeddocs/evidence/BENCHMARKING.md/docs/evidence/BENCHMARK_GOVERNANCE.mdupdated if benchmark behavior changedVerification
make cipassesmake bench-gatepasses if benchmark-sensitivemake regenerate-allif pipeline logic changed)Agent disclosure
docs/getting-started/AGENT_ONBOARDING.mdboundariesEvidence
External or wet-lab-facing impact
Dependencies and licenses
Reviewer focus