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Merged
man4ish merged 1 commit into from
Aug 8, 2026
Merged

docs: all 10 videos are recorded (not planned), fix org references #1

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44 changes: 25 additions & 19 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ Serves tutorial videos, workflow demonstrations, and the interactive Getting Sta

| Item | Value |
|------|-------|
| Image | `ghcr.io/man4ish/omnibioai-videos:latest` |
| Image | `ghcr.io/omnibioai/omnibioai-videos:latest` |
| Port | `8086` |
| Base image | `nginx:alpine` |
| Dependencies | None |
Expand Down Expand Up @@ -161,8 +161,8 @@ To redeploy after editing:

```bash
cd /home/manish/Desktop/machine/omnibioai-videos
docker build -t ghcr.io/man4ish/omnibioai-videos:latest .
docker push ghcr.io/man4ish/omnibioai-videos:latest
docker build -t ghcr.io/omnibioai/omnibioai-videos:latest .
docker push ghcr.io/omnibioai/omnibioai-videos:latest

cd /home/manish/Desktop/machine/omnibioai-studio
docker compose up -d --force-recreate videos
Expand Down Expand Up @@ -207,13 +207,13 @@ Key behaviours:

```bash
cd /home/manish/Desktop/machine/omnibioai-videos
docker build -t ghcr.io/man4ish/omnibioai-videos:latest .
docker build -t ghcr.io/omnibioai/omnibioai-videos:latest .
```

### Push to registry

```bash
docker push ghcr.io/man4ish/omnibioai-videos:latest
docker push ghcr.io/omnibioai/omnibioai-videos:latest
```

### Dockerfile
Expand All @@ -235,7 +235,7 @@ Defined in `omnibioai-studio/docker-compose.yml`:

```yaml
videos:
image: ghcr.io/man4ish/omnibioai-videos:latest
image: ghcr.io/omnibioai/omnibioai-videos:latest
ports:
- "${HOST_IP:-0.0.0.0}:8086:8086"
restart: unless-stopped
Expand Down Expand Up @@ -274,18 +274,24 @@ docker compose up -d --force-recreate videos

---

## Planned Content

| Video | Tag | Status |
|-------|-----|--------|
| Getting Started with OmniBioAI | intro | 🔲 To record |
| RNA-Seq Analysis End-to-End | tutorial | 🔲 To record |
| Single-Cell RNA-Seq with Scanpy | demo | 🔲 To record |
| Variant Calling Pipeline (WGS) | workflow | 🔲 To record |
| Running Jobs on HPC with Slurm | hpc | 🔲 To record |
| Cloud Setup — AWS Batch | tutorial | 🔲 To record |
| Using the Dev Hub RAG Search | demo | 🔲 To record |
| Registering and Running Workflows | tutorial | 🔲 To record |
## Content (10 videos recorded)

All 10 are recorded, present in `content/`, and live in `videos.json` —
verified 2026-08-07 (this table previously listed 8 of these as
"🔲 To record," which was stale):

| # | Video | Tag |
|---|-------|-----|
| 1 | Getting Started with OmniBioAI | intro |
| 2 | RNA-Seq Analysis End-to-End | tutorial |
| 3 | Single Cell RNA-Seq with Scanpy | demo |
| 4 | Variant Calling Pipeline | workflow |
| 5 | Running Jobs on HPC with Slurm | hpc |
| 6 | Literature AI — Search 36M PubMed Papers | demo |
| 7 | Lab Integrations — Benchling, REDCap & eLabFTW | demo |
| 8 | Variant Annotation — gnomAD, ClinVar & COSMIC | demo |
| 9 | Drug Discovery & Target Identification | demo |
| 10 | Control Center & Platform Monitoring | demo |

---

Expand Down Expand Up @@ -331,4 +337,4 @@ Apache 2.0 — see root `LICENSE` file.

---

*Part of the [OmniBioAI](https://github.com/man4ish/omnibioai-studio) platform.*
*Part of the [OmniBioAI](https://github.com/OmniBioAI/omnibioai-studio) platform.*
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