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Pipeline config handling #28

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@BelowBayesline

Pipeline needs to be able to differentiate between PipelineConfig data and StageConfig data. Current class methods (from_dict()) do not account for this.

Perhaps we need a wrapper class method called from_config which separates these behaviours and calls from_dict or something.

Pipeline needs an attribute to store StageConfig objects. (Mapping object)

Method to insert StageConfigurations if from_dict/from_config are not used to construct the pipeline. This is because users may use from_files() or just the generic Pipeline() constructor but still want to manage StageConfiguration prior to calling Pipeline.run()

We need a simple _create_stage_config() method which can be iteratively called by higher-level functions like the method mentioned in the paragraph above, since this behaviour is expected to be repeated.

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