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split bootstrap enrichment plots that are warped

Status: Open.

#101 In NathanSkene/EWCE;

· rbutleriii opened on Oct 3, 2025

level2 annotations error on generate_bootstrap_plots

bug

Status: Open.

#98 In NathanSkene/EWCE;

· rbutleriii opened on May 28, 2025

Gene-Scoring Table for Cell Type Enrichment

Status: Open.

#96 In NathanSkene/EWCE;

· pmayog opened on Feb 12, 2025

Bootstrap Enrichment Test For Enrichment And Depletion

Status: Open.

#95 In NathanSkene/EWCE;

· KevinMarinus opened on Oct 30, 2024

generate_celltype_data struggling with a large matrix: "too many elements (>= 2^31) selected along dimension 1 of array"

bug

Status: Open.

#91 In NathanSkene/EWCE;

· ainefairbrother opened on Nov 29, 2023

bootstrap_enrichment_test throws "Error in exp_mats[[cc]][s, ] <- sort(expD[, cc]) : replacement has length zero"

bug

Status: Open.

#86 In NathanSkene/EWCE;

· Kfarls opened on Sep 28, 2023

Consider removing <4 gene limit

benchmarkingEWCE benchmarking analysesEWCE benchmarking analyses

enhancement

good first issue

Status: Open.

#79 In NathanSkene/EWCE;

· bschilder opened on Apr 3, 2023

Enrichment test in version 1.7.1

bug

Status: Open.

#78 In NathanSkene/EWCE;

· forrestzhaosen opened on Mar 11, 2023

Choose what we're going to take as the 'true positive' results

benchmarkingEWCE benchmarking analysesEWCE benchmarking analyses

Status: Open.

#60 In NathanSkene/EWCE;

· NathanSkene opened on Mar 10, 2022

·  

Publish benchmarking paper for EWCE

How do the various methods of filtering low-expressed genes now implemented affect the results?

benchmarkingEWCE benchmarking analysesEWCE benchmarking analyses

Status: Open.

#59 In NathanSkene/EWCE;

· NathanSkene opened on Mar 10, 2022

·  

Publish benchmarking paper for EWCE

How much does parallelisation increase speed?

benchmarkingEWCE benchmarking analysesEWCE benchmarking analyses

Status: Open.

#58 In NathanSkene/EWCE;

· NathanSkene opened on Mar 10, 2022

·  

Publish benchmarking paper for EWCE

How does 1:1 ortholog definition affect results?

benchmarkingEWCE benchmarking analysesEWCE benchmarking analyses

Status: Open.

#57 In NathanSkene/EWCE;

· NathanSkene opened on Mar 10, 2022

·  

Publish benchmarking paper for EWCE