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docs: address post-tag audit findings and adjust DORI install guidance - #7947

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docs: address post-tag audit findings and adjust DORI install guidance#7947
senthilr-nv merged 11 commits into
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@miyoungc miyoungc commented Jul 30, 2026

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Summary

Documents the user-facing changes identified by the v0.0.96..v0.0.97 post-tag audit and publishes the existing agentic-documentation guide in each documentation variant. Replaces repository-local DORI contributor classification state with current-host capability detection so fresh worktrees do not repeatedly prompt users. Links the internal Skill Library and Template Library for explicit setup requests. Adds the bounded v0.0.98..v0.0.99 audit follow-ups for changelog accuracy, memory-search prerequisites, two-DGX Station route verification, and prose clarity.

Changes

  • Document the invalid_docker_host recovery procedure from fix(onboard): report an invalid DOCKER_HOST instead of a docker-group remediation #7775 and the sandbox_recovery_failed state from fix(status): recover visible post-reboot sandbox #7848.
  • Move Deep Agents runtime, automation, supervision, approval, and identity guidance from the quickstart to a focused operation page while preserving the existing anchor.
  • Publish the existing docs/resources/engineer-agentic-documentation.mdx page under Resources in all guide variants and align its route description with the live TOC.
  • Add rendered-page route tests for the Deep Agents operation page, compatibility anchor, and agentic-documentation routes.
  • Select the DORI documentation workflow from current host capabilities. Use the checked-in writing guide when the verified NVIDIA Skill Library is unavailable, and reserve DORI setup for explicit installation or configuration requests.
  • Link the NVIDIA Skill Library and Template Library from the DORI setup guide with their distinct installation roles.
  • Correct the Hermes dependency-review punctuation identified by the audit.
  • Correct the v0.0.99 changelog attribution for the focused runtime identity, two-DGX Station vLLM, and memory search pages.
  • State the already-running Ollama embedding prerequisite and /api/tags acceptance criterion for memory search.
  • Add post-install route and runtime verification for the two-DGX Station vLLM procedure, including the limits of the reachable status.
  • Split dense Microsoft Entra and Hermes configuration-root explanations without changing their supported behavior or information architecture.
  • Reserve sandbox_recovery_failed guidance for an unproven agent delivery chain and keep Docker readiness failures under their separate preflight layers.

Type of Change

  • Code change (feature, bug fix, or refactor)
  • Code change with doc updates
  • Doc only (prose changes, no code sample modifications)
  • Doc only (includes code sample changes)

Quality Gates

  • Tests added or updated for changed behavior
  • Existing tests cover changed behavior — justification:
  • Tests not applicable — justification:
  • Docs updated for user-facing behavior changes
  • Docs not applicable — justification:
  • Sensitive paths changed (security, policy, credentials, preflight, onboarding, inference, runner, sandbox, or messaging)
  • Sensitive-path review completed or maintainer-approved waiver recorded — reviewer/approval link/justification:
  • Non-success, skipped, or missing CI check accepted by maintainer — check name, approval link, and follow-up issue:

Documentation Writer Review

  • Documentation writer subagent reviewed the completed changes
  • Result: docs-updated
  • Evidence: Reviewed the full effective 17-file PR diff, including .gitignore, AGENTS.md, docs/AGENTS.md, docs/DORI_SETUP.md, docs/index.yml, docs/changelog/2026-07-30.mdx, docs/configure-agents/configure-memory-search.mdx, docs/get-started/quickstart-langchain-deepagents-code.mdx, docs/inference/set-up-vllm-on-two-dgx-stations.mdx, docs/manage-sandboxes/run-deep-agents-code.mdx, docs/reference/commands.mdx, docs/reference/configure-runtime-identity.mdx, docs/reference/troubleshooting.mdx, docs/resources/engineer-agentic-documentation.mdx, docs/security/hermes-0.19.0-dependency-review.md, scripts/check-docs-published-routes.mts, and test/check-docs-published-routes.test.ts. The independent reviewer checked product scope, writing rules, documentation style, terminology, structure, voice, code samples, prerequisites, risks, navigation, routes, guide variants, and source-backed technical claims. The headless mutation warning now precedes the first dcode -n command. Plugin build passed; the focused six-file Vitest suite passed 88 tests; npm run docs passed with 65 guarded routes and 0 Fern errors. Final result: PASS on d65f1793.
  • Agent: Codex Desktop

DGX Station Hardware Evidence

  • Tested on DGX Station
  • Tested commit:
  • Station profile/scenario:
  • Result:
  • Supporting evidence:

Verification

  • PR description includes a Signed-off-by: line and every commit appears as Verified in GitHub
  • Normal pre-commit, commit-msg, and pre-push hooks passed, or npm run validate:pr passed after refreshing origin/main when hooks were skipped or unavailable
  • Targeted behavior tests pass for the current change set, or tests are marked not applicable above — npx vitest run test/changelog-docs.test.ts test/station-doc-ownership.test.ts test/inference-options-docs.test.ts test/check-docs-links.test.ts test/sync-agent-variant-docs.test.ts passed 58 tests on the reviewed head.
  • Applicable broad gate passed — npm test for broad runtime/test-harness changes; npm run check for repo-wide validation/coverage changes — not applicable because this PR does not change runtime behavior or repository-wide validation.
  • Quality Gates section completed with required justifications or waivers
  • No secrets, API keys, or credentials committed
  • npm run docs builds without warnings (doc changes only) — it passed with 0 errors and the existing Fern CLI upgrade warning.
  • Doc pages follow the style guide (doc changes only)
  • New doc pages include SPDX header and frontmatter (new pages only)

Signed-off-by: Miyoung Choi miyoungc@nvidia.com

Summary by CodeRabbit

  • Documentation

    • Added a comprehensive guide for running Deep Agents Code in managed sandboxes, including interactive, headless, JSON, approval, and troubleshooting workflows.
    • Added navigation links for Deep Agents, OpenClaw, and Hermes resources.
    • Simplified the Deep Agents quickstart and linked to the dedicated runtime guide.
    • Updated command references and documented recovery status handling.
    • Added guidance for resolving invalid Docker host configuration errors.
    • Clarified documentation routing and setup guidance.
  • Tests

    • Added coverage to validate published documentation routes and links.

@miyoungc miyoungc added the area: docs Documentation, examples, guides, or docs build label Jul 30, 2026
@miyoungc miyoungc self-assigned this Jul 30, 2026
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📝 Walkthrough

Walkthrough

This PR revises DORI routing guidance, adds a managed Deep Agents Code runtime guide, updates related references and navigation, adds troubleshooting content, and validates published documentation routes.

Changes

DORI routing policy

Layer / File(s) Summary
Capability-based DORI routing
AGENTS.md, docs/AGENTS.md, .gitignore
DORI routing now uses verified host capabilities and Skill Library access. Normal documentation tasks do not use repository-scoped identity classification.
Explicit setup access rules
docs/DORI_SETUP.md
Setup guidance requires private-source access confirmation and prohibits repository-scoped identity or authorization files.

Deep Agents documentation

Layer / File(s) Summary
Managed runtime guide
docs/manage-sandboxes/run-deep-agents-code.mdx
Adds execution modes, JSON output behavior, isolation constraints, approval boundaries, auto-approval configuration, and runtime inspection commands.
Runtime documentation wiring
docs/get-started/quickstart-langchain-deepagents-code.mdx, docs/reference/commands.mdx, docs/index.yml
Links existing guidance to the new runtime guide and adds the guide to Deep Agents navigation.
Published route rendering and validation
scripts/check-docs-published-routes.mts, test/check-docs-published-routes.test.ts
Extracts rendered published-page handling and validates Deep Agents and agentic documentation routes.

Documentation navigation and references

Layer / File(s) Summary
Engineering resource navigation
docs/index.yml, docs/resources/engineer-agentic-documentation.mdx
Adds engineering documentation resources for all variants and updates the navigation mapping example.
Reference and troubleshooting updates
docs/reference/commands.mdx, docs/reference/troubleshooting.mdx, docs/security/hermes-0.19.0-dependency-review.md, docs/changelog/2026-07-30.mdx, docs/configure-agents/configure-memory-search.mdx, docs/inference/set-up-vllm-on-two-dgx-stations.mdx, docs/reference/configure-runtime-identity.mdx
Updates recovery messaging, Docker host remediation, runtime prerequisites, inference verification, identity guidance, changelog text, and Hermes policy documentation.

Estimated code review effort: 3 (Moderate) | ~25 minutes

Possibly related PRs

Suggested labels: chore

Suggested reviewers: prekshivyas, cv

🚥 Pre-merge checks | ✅ 5
✅ Passed checks (5 passed)
Check name Status Explanation
Docstring Coverage ✅ Passed No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.
Linked Issues check ✅ Passed Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check ✅ Passed Check skipped because no linked issues were found for this pull request.
Description Check ✅ Passed Check skipped - CodeRabbit’s high-level summary is enabled.
Title check ✅ Passed The title clearly summarizes the post-tag documentation audit updates and the revised DORI installation guidance.
✨ Finishing Touches
🧪 Generate unit tests (beta)
  • Create PR with unit tests
  • Commit unit tests in branch codex/post-tag-docs-audit-20260730-131916

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Code Coverage Overview

Languages: TypeScript

TypeScript / code-coverage/plugin

The overall coverage in commit d65f179 in the codex/post-tag-docs-... branch remains at 96%, unchanged from commit 90f7391 in the main branch.

TypeScript / code-coverage/cli

The overall coverage in commit d65f179 in the codex/post-tag-docs-... branch remains at 81%, unchanged from commit 90f7391 in the main branch.

Show a code coverage summary of the most impacted files.
File main 90f7391 codex/post-tag-docs-... d65f179 +/-
src/lib/domain/.../connect-env.ts 97% 89% -8%
src/lib/sandbox...rce-identity.ts 88% 88% 0%

Updated July 31, 2026 22:43 UTC

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PR Review Advisor — No blocking findings reported

Advisor assessment: No blocking advisor findings reported
Next action: No advisor follow-up needed.
Findings: 0 blockers · 0 warnings · 0 suggestions

Model lanes

  • GPT-5.6 Terra (primary): Completed · high confidence · 0 blockers · 0 warnings · 0 suggestions
  • Nemotron 3 Ultra (second opinion): Completed · high confidence · 0 blockers · 0 warnings · 0 suggestions
  • Model comparison: normalized findings match; normalized E2E selections match; severity counts match.

Second-opinion E2E selections are advisory. They do not change the primary assessment or E2E / PR Gate.

E2E guidance

Advisory only. E2E / PR Gate selects and runs jobs independently.

Recommended E2E: None

Workflow run details

This automated review informs maintainers. Warnings and suggestions do not require a response. A maintainer decides whether to merge.

@miyoungc
miyoungc marked this pull request as ready for review July 30, 2026 22:50
@miyoungc
miyoungc marked this pull request as draft July 30, 2026 22:56

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Actionable comments posted: 1

🧹 Nitpick comments (1)
test/check-docs-published-routes.test.ts (1)

473-476: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Prefer public-boundary assertions over raw source-text checks.

This test already validates link resolution behaviorally via findBrokenPublishedRoutes(quickstartSource, index) on line 472. The subsequent .split('<a id="use-the-harness"></a>') and .toContain("[Run Deep Agents Code](...)") checks lock the test to exact source markup/phrasing rather than resolved outcomes, so a harmless rewording of the link text or anchor placement would fail the test even though the actual route still resolves correctly.

As per path instructions, "Prefer observable outcomes through the public boundary over source-text, private-shape, or mock-call assertions." Consider expressing the link-target check via extractMarkdownLinks/resolvePublishedRoute (checking the resolved target instead of the literal markdown string) where practical.

♻️ Example of asserting via the resolved target instead of literal text
-    expect(quickstart).toContain(
-      "[Run Deep Agents Code](../manage-sandboxes/operate-sandboxes/run-deep-agents-code)",
-    );
+    const link = extractMarkdownLinks(quickstart).find((l) =>
+      l.target.includes("run-deep-agents-code"),
+    );
+    expect(link).toBeDefined();
+    expect(
+      resolvePublishedRoute("/user-guide/deepagents/get-started/quickstart", link!.target),
+    ).toBe("/user-guide/deepagents/manage-sandboxes/operate-sandboxes/run-deep-agents-code");
🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@test/check-docs-published-routes.test.ts` around lines 473 - 476, Replace the
raw quickstart source assertions in the test with public-boundary checks using
extractMarkdownLinks and resolvePublishedRoute, or the existing
findBrokenPublishedRoutes flow, to verify that the relevant link resolves to the
expected published route. Remove dependence on the exact anchor markup and link
text while preserving validation of the intended target.

Source: Path instructions

🤖 Prompt for all review comments with AI agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

Inline comments:
In `@docs/AGENTS.md`:
- Around line 78-80: Update the DORI routing instructions in the documentation
workflow so they are only required when the current host has the verified NVIDIA
documentation Skill Library; otherwise, allow agents to use the existing
non-blocking fallback without attempting DORI or prompting for setup. Adjust the
routing guidance around the NVIDIA DORI Routing reference and fallback to make
this conditional behavior explicit.

---

Nitpick comments:
In `@test/check-docs-published-routes.test.ts`:
- Around line 473-476: Replace the raw quickstart source assertions in the test
with public-boundary checks using extractMarkdownLinks and
resolvePublishedRoute, or the existing findBrokenPublishedRoutes flow, to verify
that the relevant link resolves to the expected published route. Remove
dependence on the exact anchor markup and link text while preserving validation
of the intended target.
🪄 Autofix (Beta)

Fix all unresolved CodeRabbit comments on this PR:

  • Push a commit to this branch (recommended)
  • Create a new PR with the fixes

ℹ️ Review info
⚙️ Run configuration

Configuration used: Path: .coderabbit.yaml

Review profile: CHILL

Plan: Enterprise

Run ID: 6bea6ad6-6c51-46c6-8dd9-1d90915bfe13

📥 Commits

Reviewing files that changed from the base of the PR and between ef32617 and c93b61b.

📒 Files selected for processing (12)
  • .gitignore
  • AGENTS.md
  • docs/AGENTS.md
  • docs/DORI_SETUP.md
  • docs/get-started/quickstart-langchain-deepagents-code.mdx
  • docs/index.yml
  • docs/manage-sandboxes/run-deep-agents-code.mdx
  • docs/reference/commands.mdx
  • docs/reference/troubleshooting.mdx
  • docs/resources/engineer-agentic-documentation.mdx
  • docs/security/hermes-0.19.0-dependency-review.md
  • test/check-docs-published-routes.test.ts

Comment thread docs/AGENTS.md Outdated
Signed-off-by: Miyoung Choi <miyoungc@nvidia.com>
@miyoungc
miyoungc marked this pull request as ready for review July 31, 2026 00:08

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Actionable comments posted: 1

🤖 Prompt for all review comments with AI agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

Inline comments:
In `@test/check-docs-published-routes.test.ts`:
- Around line 468-479: Update the assertions around findBrokenPublishedRoutes
and the quickstart link checks to use the rendered published-page body from the
same rendering path as findBrokenPublishedRoutes, rather than raw MDX sources.
Verify the runtime route and use-the-harness anchor through observable rendered
Deep Agents route content, preserving the existing published-route expectations.
🪄 Autofix (Beta)

Fix all unresolved CodeRabbit comments on this PR:

  • Push a commit to this branch (recommended)
  • Create a new PR with the fixes

ℹ️ Review info
⚙️ Run configuration

Configuration used: Path: .coderabbit.yaml

Review profile: CHILL

Plan: Enterprise

Run ID: 1600e187-8791-43f6-b77e-fc9438b26d57

📥 Commits

Reviewing files that changed from the base of the PR and between c93b61b and 35d8bc4.

📒 Files selected for processing (2)
  • docs/AGENTS.md
  • test/check-docs-published-routes.test.ts

Comment thread test/check-docs-published-routes.test.ts
Signed-off-by: Miyoung Choi <miyoungc@nvidia.com>
@miyoungc
miyoungc marked this pull request as draft July 31, 2026 00:54
Signed-off-by: Miyoung Choi <miyoungc@nvidia.com>
@miyoungc
miyoungc marked this pull request as ready for review July 31, 2026 01:25
miyoungc added 4 commits July 31, 2026 10:57
Signed-off-by: Miyoung Choi <miyoungc@nvidia.com>
Signed-off-by: Miyoung Choi <miyoungc@nvidia.com>
Signed-off-by: Miyoung Choi <miyoungc@nvidia.com>
@miyoungc miyoungc changed the title docs: address post-tag audit findings docs: address post-tag audit findings and adjust DORI install guidance Jul 31, 2026
@senthilr-nv senthilr-nv self-assigned this Jul 31, 2026

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Product-scope verdict: PASS. This PR reorganizes and clarifies existing maintained NemoClaw documentation; it does not establish a new supported integration or solution surface.

Changes requested: move or duplicate the headless automation warning before the first dcode -n command. The current ordering presents a mutating automation command before disclosing that headless mode has no approval UI and automatically approves non-shell tools, including file writes and edits. This violates the high-risk procedure contract and can cause unreviewed workspace mutations.

After the correction, rerun the affected route/docs checks and refresh the documentation-writer receipt for the new exact head. GitHub currently reports BLOCKED separately because review is required and 12 checks are pending.

Comment thread docs/manage-sandboxes/run-deep-agents-code.mdx
Signed-off-by: Senthil Ravichandran <senthilr@nvidia.com>
@senthilr-nv

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Addressed the headless approval-boundary finding in verified commit d65f1793.

The Deep Agents guide now places a warning before the first dcode -n command that states headless mode has no approval UI and automatically approves non-shell tool requests, including file writes and edits. The same commit also applies the reviewed allowlist and refer to terminology corrections.

Exact-head validation: focused Vitest passed 6 files / 88 tests, npm run docs passed with 65 guarded routes and 0 Fern errors, the independent documentation-writer review passed, and the exact-head receipt and DCO checks pass.

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Approved at exact head d65f179. Product scope: PASS. The headless approval-boundary finding is addressed, focused tests and docs validation pass, independent documentation-writer review passes, all review threads are resolved, and automated review reports no findings.

@senthilr-nv
senthilr-nv enabled auto-merge (squash) July 31, 2026 22:37
@senthilr-nv
senthilr-nv merged commit b2e9d1b into main Jul 31, 2026
76 of 77 checks passed
@senthilr-nv
senthilr-nv deleted the codex/post-tag-docs-audit-20260730-131916 branch July 31, 2026 22:49
@senthilr-nv senthilr-nv mentioned this pull request Aug 1, 2026
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senthilr-nv added a commit that referenced this pull request Aug 1, 2026
<!-- markdownlint-disable MD041 -->
## Summary

Adds the canonical dated changelog entry for `v0.0.100` so the
maintainer release plan can verify the pre-tag documentation
prerequisite. The entry summarizes the user-facing changes merged since
`v0.0.99` and links to the relevant guides.

## Changes

- Add `docs/changelog/2026-07-31.mdx` with the exact `## v0.0.100`
heading.
- Cover restored OpenClaw pairing, transactional replacement, Deep
Agents Code, onboarding recovery, lifecycle cleanup, Hermes builds, host
provenance, documentation, and trusted E2E evidence.
- Distinguish active Docker and Kubernetes runtime-bundle enforcement
from the still-inactive managed shared-state transaction foundation.

## Source Coverage

The release entry maps the doc-impacting merged PRs in the
`v0.0.99..main` release range to `docs/changelog/2026-07-31.mdx`: #8021,
#8024, #7973, #8028, #7947, #7788, #7884, #8023, #7969, #8020, #7989,
#8000, #7907, #7942, #7567, #8013, #7955, #8017, #8014, #8015, #7629,
#7644, #7821, #7971, and #7991.

PR #7974 was reviewed after the final rebase and excluded because it
changes internal maintainer-skill attribution policy and tests only; it
does not change a user-facing product or documentation surface.

## Type of Change

- [ ] Code change (feature, bug fix, or refactor)
- [ ] Code change with doc updates
- [x] Doc only (prose changes, no code sample modifications)
- [ ] Doc only (includes code sample changes)

## Quality Gates

- [ ] Tests added or updated for changed behavior
- [x] Existing tests cover changed behavior — justification: the
changelog contract test validates the dated entry, version heading, SPDX
form, and route constraints.
- [ ] Tests not applicable — justification:
- [x] Docs updated for user-facing behavior changes
- [ ] Docs not applicable — justification:
- [ ] Sensitive paths changed (security, policy, credentials, preflight,
onboarding, inference, runner, sandbox, or messaging)
- [ ] Sensitive-path review completed or maintainer-approved waiver
recorded — reviewer/approval link/justification:
- [ ] Non-success, skipped, or missing CI check accepted by maintainer —
check name, approval link, and follow-up issue:

## Documentation Writer Review

- [x] Documentation writer subagent reviewed the completed changes
- Result: `docs-updated`
- Evidence: `docs/changelog/2026-07-31.mdx`; exact-head review passed
for `6093f44f`; writing rules and documentation style reviewed; `npx
vitest run test/changelog-docs.test.ts` passed 6/6; `npm run docs`
passed with zero Fern errors and two generic Fern upgrade notices.
- Agent: Codex Desktop
<!-- docs-review-head-sha: 6093f44 -->
<!-- docs-review-agents-blob-sha: 3dd7c24 -->

## DGX Station Hardware Evidence

- [ ] Tested on DGX Station
- Tested commit: Not applicable; no DGX Station host script changed.
- Station profile/scenario: Not applicable.
- Result: Not applicable.
- Supporting evidence: Not applicable.

## Verification

- [x] PR description includes a `Signed-off-by:` line and every commit
appears as `Verified` in GitHub
- [x] Normal `pre-commit`, `commit-msg`, and `pre-push` hooks passed, or
`npm run validate:pr` passed after refreshing `origin/main` when hooks
were skipped or unavailable
- [x] Targeted behavior tests pass for the current change set, or tests
are marked not applicable above — command/result or justification: `npx
vitest run test/changelog-docs.test.ts` passed 6/6 at `6093f44f`.
- [ ] Applicable broad gate passed — `npm test` for broad
runtime/test-harness changes; `npm run check` for repo-wide
validation/coverage changes — command/result: Not applicable to a dated
prose-only release entry.
- [x] Quality Gates section completed with required justifications or
waivers
- [x] No secrets, API keys, or credentials committed
- [ ] `npm run docs` builds without warnings (doc changes only) —
validation passed with zero errors; Fern emitted two generic upgrade
notices.
- [x] Doc pages follow the [style
guide](https://github.com/NVIDIA/NemoClaw/blob/main/docs/CONTRIBUTING.md)
(doc changes only)
- [ ] New doc pages include SPDX header and frontmatter (new pages only)
— the changelog entry has the required parser-safe MDX SPDX header;
dated changelog entries intentionally do not use page frontmatter.

---

Signed-off-by: Senthil Ravichandran <senthilr@nvidia.com>


<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->

## Summary by CodeRabbit

* **Documentation**
  * Added release notes for v0.0.100.
* Documented improvements to restore pairing, sandbox replacement,
onboarding recovery, lifecycle cleanup, runtime handling, build support,
host readiness, and end-to-end validation.

<!-- end of auto-generated comment: release notes by coderabbit.ai -->

Signed-off-by: Senthil Ravichandran <senthilr@nvidia.com>
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