Efficiencies#3

Merged

nasiryahm merged 49 commits into

mainfrom

May 21, 2026

Commits on Mar 24, 2026

fix: Parallelization broken in lpca and different parallelism backends unified. Removed duplicated imports.
nasiryahm
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Tests: Update to CI for new parallel library changes plus fix for randomization issue
nasiryahm
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speedup: Parallelization of post-processing neighbour distance measures using smart triu and neighbourhood graph checks
nasiryahm
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speedup: Vectorizing pdist
nasiryahm
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fix: Improving error handling and variable descriptions
nasiryahm
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style: Code cleanups for neatness and readability. Removed unused procrustes code.
nasiryahm
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CI: New continuous integration testing for speed. Tests speed across a range of datapoint numbers
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speedup: Dhruv's eigh implementation
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fix: Imports fix
nasiryahm
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speedup: Vectorizing B construction and avoiding sparse to dense conversions
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speedup: Speedup of zeta function by replacing pdist with measurement of row and col via nonzero and dist measure. Plus better csc usage
nasiryahm
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Merging zeta change
nasiryahm
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tests: Updating benchmarking tests to include windows, mac, and linux test
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Test: Adding a test benchmark script to give timings across different commits
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Fix: Issue with sha code
nasiryahm
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Matrixifying refs for benchmarks and removing Dhruv's
nasiryahm
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Efficiency: Memefficiency via Joshua code and and updated sha for comparisons
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Fix: new mode of batch all and importing
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Fix: Past git repo commit needed init
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Update: Cleaner method for src reconstruction for commit comparisons
nasiryahm
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Commits on Mar 25, 2026

Commits on Apr 12, 2026

feat: add global distortion measurement
ffOj
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Commits on May 21, 2026