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Include neighbor lists and pressure computation in non-movable cells. #410

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Include neighbor lists and pressure computation in non-movable cells. #410

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c9a6cec
more robust macro to check for windows
drbergman Jan 15, 2025
d73c253
Merge pull request #352 from drbergman/better-windows-macros
MathCancer Jan 20, 2025
dbd3499
Merge pull request #354 from MathCancer/development
MathCancer Jan 20, 2025
eb5e511
first commit
heberlr Jan 31, 2025
69a23db
revert back to 1.14.2 state (but different hash)
drbergman Jan 31, 2025
54c5b20
Merge branch 'development' into pr-neighbor-list-for-non-movable-cells
heberlr Feb 17, 2026
683ef89
Allow non-movable cells to have neighbors list and calculate simple p…
heberlr Feb 17, 2026
1c4f50f
Revert "more robust macro to check for windows"
heberlr Feb 17, 2026
650eb7c
Reapply "more robust macro to check for windows"
heberlr Feb 17, 2026
7ffa1a6
check is_movable in add_potential function: avoid update velocity
heberlr May 8, 2026
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2 changes: 1 addition & 1 deletion core/PhysiCell_cell.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -1066,7 +1066,7 @@ void Cell::add_potentials(Cell* other_agent)
state.neighbors.push_back(other_agent); // move here in 1.10.2 so non-adhesive cells also added.
}
/////////////////////////////////////////////////////////////////
if( fabs(temp_r) < 1e-16 )
if( fabs(temp_r) < 1e-16 || is_movable == false )
{ return; }
temp_r /= distance;
// for( int i = 0 ; i < 3 ; i++ )
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2 changes: 1 addition & 1 deletion core/PhysiCell_cell_container.cpp
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Expand Up @@ -240,7 +240,7 @@ void Cell_Container::update_all_cells(double t, double phenotype_dt_ , double me
for( int i=0; i < (*all_cells).size(); i++ )
{
Cell* pC = (*all_cells)[i];
if( pC->functions.update_velocity && pC->is_out_of_domain == false && pC->is_movable )
if( pC->functions.update_velocity && pC->is_out_of_domain == false )
{ pC->functions.update_velocity( pC,pC->phenotype,time_since_last_mechanics ); }
}

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2 changes: 1 addition & 1 deletion modules/PhysiCell_settings.cpp
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Expand Up @@ -378,7 +378,7 @@ bool create_directory(const std::string &path)
#else
bool create_directory(const std::string &path)
{
#if defined(__MINGW32__) || defined(__MINGW64__)
#if defined(_WIN32)
bool success = mkdir(path.c_str()) == 0;
#else
bool success = mkdir(path.c_str(), 0755) == 0;
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