Add automated tests, ci, etc.

.github/dependabot.yml

@@ -0,0 +1,11 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"

.github/workflows/ci.yml

@@ -0,0 +1,57 @@
+name: CI
+
+on:
+  pull_request:
+  push:
+    branches:
+      - master
+  workflow_dispatch:
+
+jobs:
+  # pre-commit:
+  #   runs-on: ubuntu-latest
+  #   steps:
+  #     - uses: actions/checkout@v6.0.2
+  #     - uses: actions/setup-python@v6
+  #     - uses: pre-commit/action@v3.0.1
+
+  test:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: true
+      max-parallel: 10 
+      matrix:
+        os: ["ubuntu-latest", "windows-latest", "macos-latest"]
+        python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"]
+
+    steps:
+      - name: Checkout source
+        uses: actions/checkout@v6
+
+      - name: Setup conda environment
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          miniconda-version: "latest"
+          python-version: ${{ matrix.python-version }}
+          environment-file: ci/env.yml
+          activate-environment: pcnv-dev
+          auto-activate-base: false
+
+      - name: Test build distribution
+        shell: bash -l {0}
+        run: |
+          git clean -xdf
+          pyproject-build
+
+      - name: Install source
+        shell: bash -l {0}
+        run: python -m pip install .
+
+      - name: List installed packages
+        shell: bash -l {0}
+        run: conda list
+
+      - name: Run tests
+        shell: bash -l {0}
+        run: python -m pytest -s --cov=pyncv --cov-report=xml .
+

README.rst

@@ -27,26 +27,30 @@ earlier versions, but its not supported. The newest
 depends also on python 3.5+, pycnv heavily depends on the gsw toolbox. It
 therefore strongly recommended to use python 3.5+.
 
+___
+
+CT Note: Python versions below 3.10 are now EOL'ed, so I'm gonna update to require 3.10+ if thats okay?
+
 User
 ____
 
 
 Install as a user using pip
 
 .. code:: bash
-	  
+
    pip install pycnv
 
 Install as a user from the repository
 
 .. code:: bash
-	  
+
    python setup.py install --user
 
 Uninstall as a user
-   
+
 .. code:: bash
-	  
+
    pip uninstall pycnv
 
 
@@ -57,13 +61,15 @@ _________
 Install as a developer
 
 .. code:: bash
-
-   python setup.py develop --user
+
+   conda env create -f ci/env.yml
+   conda activate pycnv-dev
+   pip install -e .
 
 Uninstall as a user
-   
+
 .. code:: bash
-	  
+
    pip uninstall pycnv
 
 
@@ -85,16 +91,16 @@ FEATURES
   is stored in a second field called computed data:
   cdata. E.g. cdata['SA00']. The code used to compute the properties
   are
-  
+
   .. code:: python
-	    
+
             SP = gsw.SP_from_C(data['C' + isen], T, data['p'])
             SA = gsw.SA_from_SP(SP,data['p'],lon = lon, lat = lat)
             if(baltic == True):
 	        SA = gsw.SA_from_SP_Baltic(SA,lon = lon, lat = lat)
-            
+
 	    PT = gsw.pt0_from_t(SA, T, data['p'])
-            CT = gsw.CT_from_t(SA, T, data['p'])        
+            CT = gsw.CT_from_t(SA, T, data['p'])
             pot_rho = gsw.pot_rho_t_exact(SA, T, data['p'], p_ref)
 
 - The cnv object provides standard entries for pressure (cnv.p),
@@ -127,15 +133,15 @@ The package installs the executables:
 
 - pycnv_sum_folder
 
-  
-EXAMPLES 
+
+EXAMPLES
 --------
 Plot the absolute salinity and oxygen of a CTD cast:
 
 .. code:: python
-	  
+
 	  import pycnv
-	  import pylab as pl 
+	  import pylab as pl
 	  fname = 'test.cnv' # Some CTD cast
 
 	  cnv = pycnv.pycnv(fname)
@@ -155,7 +161,7 @@ Plot the absolute salinity and oxygen of a CTD cast:
 	  # Get unit of derived data
 	  datad0_unit = cnv.cunits[keyd0]
 
-	  # Standard names are mapped to 
+	  # Standard names are mapped to
 	  # cnv.p,cnv.CT,cnv.T,cnv.SP,cnv.oxy
 	  # units are _unit, e.g. cnv.p_unit
 
@@ -179,11 +185,11 @@ Plot the absolute salinity and oxygen of a CTD cast:
 	  pl.show()
 
 
-	  
+
 Lists all predefined stations (in terminal):
 
 .. code:: bash
-	  
+
 	  pycnv_sum_folder --list_stations
 
 
@@ -192,14 +198,14 @@ station TF0271 with a radius of 5000 m, prints it to the terminal and
 saves it into the file TF271.txt  (in terminal):
 
 .. code:: bash
-	  
+
 	  pycnv_sum_folder --data_folder cnv_data --station TF0271 5000 -p -f TF271.txt
 
 
 Show and plot conservative temperature, salinity and potential density of a cnv file into a pdf:
 
 .. code:: bash
-	  
+
 	  pycnv --plot show,save,CT00,SA00,pot_rho00 ctd_cast.cnv
 
 
@@ -208,7 +214,7 @@ Interpolate all CTD casts on station TF0271 onto the same pressure axis and make
 see code pycnv/test/make_netcdf.py
 
 
-Devices tested 
+Devices tested
 --------------
 
 - SEACAT (SBE16) V4.0g
@@ -220,8 +226,3 @@ Devices tested
 - SBE 11plus V 5.1g
 
 - Sea-Bird SBE 9 Software Version 4.206
-
-
-
-
-

ci/env.yml

@@ -0,0 +1,21 @@
+name: pycnv-dev
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - python>=3.10
+  - setuptools
+  - wheel
+  - proj
+  - gsw
+  - pyproj
+  - pytest
+  - pytz
+  - pyaml
+  - matplotlib
+  - cartopy
+  - pip
+  - pip:
+    - pytest
+    - build
+    - pytest-cov