Add affine matrix to phantom#172
Draft
J-Endres wants to merge 7 commits into
Draft
Conversation
…ne matrix of a phantom, e.g. 2D of a 3D brainweb phantom
- apply affine matrix on the voxel positions - use affine matrix for nyquist calculation
Add recover function for new phantom standard Add plot function for new phantom standard
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
New "reslice_to" field in NIfTI phantoms - will resample data to selected resolution + affine on load.
This also adds the affine to the phantom properties, which defines size, orientation and position of the phantom.