Skip to content

Populate base.Base table in the populate step #357

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
lecriste merged 1 commit into from
Aug 20, 2026
Merged

Populate base.Base table in the populate step #357

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
7 changes: 7 additions & 0 deletions dj_pipeline/cron_scenario.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -86,6 +86,7 @@ def import_core_schemas():
from vr4mice.schema import (
vr4mice,
barcodes,
base,
base_analysis,
dlc,
interpolated_trajectories,
Expand All @@ -97,6 +98,7 @@ def import_core_schemas():
return (
vr4mice,
barcodes,
base,
base_analysis,
dlc,
interpolated_trajectories,
Expand All @@ -115,6 +117,7 @@ def import_core_schemas():
(
vr4mice,
barcodes,
base,
base_analysis,
dlc,
interpolated_trajectories,
Expand All @@ -140,6 +143,10 @@ def import_core_schemas():
"vr4mice.Collab.populate",
lambda: populate_pending(vr4mice.Collab, vr4mice.Dataset, logger=logger),
)
run_step(
"base.Base.populate",
lambda: populate_pending(base.Base, vr4mice.Dataset, logger=logger),
)
run_step(
"base_analysis.DataFrame.populate",
lambda: populate_pending(
Expand Down
3 changes: 2 additions & 1 deletion dj_pipeline/run.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -98,7 +98,7 @@ def check_folder_existence(folder_path):

elif args.mode == "populate":
from vr4mice.actions.populate_rig import populate_rig
from vr4mice.schema import vr4mice
from vr4mice.schema import base, vr4mice
from vr4mice.utils.populate_helpers import populate_pending

if args.aws:
Expand All @@ -114,6 +114,7 @@ def check_folder_existence(folder_path):
# populate run.
populate_rig(path=path, move=move)
populate_pending(vr4mice.Collab, vr4mice.Dataset, logger=logger)
populate_pending(base.Base, vr4mice.Dataset, logger=logger)
vr4mice.Batch.insert(vr4mice.Batch.contents, skip_duplicates=True)
vr4mice.DatasetBatch().populate()

Expand Down
Loading