MEP-LINCS Preprocessing, QA and Analysis Scripts

Change the bins values to improve the histogram figures' readability

MEP-LINCS Preprocessing, QA and Analysis Scripts

This release reduces file sizes by limiting numeric values to 4 significant digits. Interactive heatmaps are now created with the heatmaply package and the script provenances are included in the SSC files. There are also cleanups in the analysis reports.

MEP-LINCS Preprocessing, QA and Analysis Scripts

This release adds the GitHub script links into the provenance of the files on Synpase. There is now a file on Synapse that contains manual overrides for when the autogating algorithms fail. The DNA2n signal is now optional to support analyses of plates where the DAPI signals are not bimodal.

MEP-LINCS Preprocessing, QA and Analysis Scripts

This is the initial release of the scripts used to preprocess, QA and normalize the Oregon Health and Science University's MEP-LINCS data. These scripts use v1.0.0 of the R MEMA package https://github.com/MEP-LINCS/MEMA.

An experiment overview with protocols, the data, reports and data exploration tools are available at https://www.synapse.org/#!Synapse:syn2862345/wiki/72486.

MEP-LINCS Preprocessing, QA and Analysis Scripts

This pre-release includes additional documentation and fixes some typos.

MEP-LINCS Preprocessing, QA and Analysis Scripts

This release reads and writes all data levels to and from Synapse.

MEP-LINCS Preprocessing, QA and Analysis Scripts

These scripts use the MEMA package version 0.1.0 to preprocess, QA and analyze MEP-LINCs data.

MEP-LINCS Preprocessing, QA and Analysis Scripts

These scripts preprocess, normalize, QA and analyze MEP-LINCS data by using the MEMA package at https://github.com/MEP-LINCS/MEMA.