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789 Commits
DKL_SR_methods_fig
DKL_SR_methods_fig
 
 
DKL_gross_paw_track
DKL_gross_paw_track
 
 
DLC_summary_plots
DLC_summary_plots
 
 
DeepLabCut_scripts
DeepLabCut_scripts
 
 
JOVE_figs
JOVE_figs
 
 
Libraries
Libraries
 
 
Manual Tracking Analysis
Manual Tracking Analysis
 
 
Manual_Paw_Joints_Marking
Manual_Paw_Joints_Marking
 
 
R01_2020_figs
R01_2020_figs
 
 
SR_methods_paper
SR_methods_paper
 
 
Util
Util
 
 
VAMerit2021_kinematics
VAMerit2021_kinematics
 
 
VA_Merit_spring_2020
VA_Merit_spring_2020
 
 
Vibin's Random (S)crap
Vibin's Random (S)crap
 
 
allfns
allfns
 
 
archive
archive
 
 
calibration_for_deeplabcut
calibration_for_deeplabcut
 
 
gross_paw_trajectories_20170707
gross_paw_trajectories_20170707
 
 
html
html
 
 
legacy
legacy
 
 
opto_analysis
opto_analysis
 
 
sr box calibration
sr box calibration
 
 
tattoo_track_testing
tattoo_track_testing
 
 
.DS_Store
.DS_Store
 
 
.gitignore
.gitignore
 
 
GUIcreateManualPoints.m
GUIcreateManualPoints.m
 
 
GUImanualPointsChecklist.fig
GUImanualPointsChecklist.fig
 
 
GUImanualPointsChecklist.m
GUImanualPointsChecklist.m
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
SR_batch_rename_files.m
SR_batch_rename_files.m
 
 
VA_merit_Aim2_antic_results.m
VA_merit_Aim2_antic_results.m
 
 
_hsvBounds.mat
_hsvBounds.mat
 
 
_pixelBounds.mat
_pixelBounds.mat
 
 
_pxToMm.mat
_pxToMm.mat
 
 
_videoFile.mat
_videoFile.mat
 
 
analyzeTrials.m
analyzeTrials.m
 
 
archive_readLogData.m
archive_readLogData.m
 
 
camParamsFromBGimg.m
camParamsFromBGimg.m
 
 
cleanCentroids.m
cleanCentroids.m
 
 
cleanHull.m
cleanHull.m
 
 
createAvi.m
createAvi.m
 
 
createPawVideos.m
createPawVideos.m
 
 
createTrialData.m
createTrialData.m
 
 
createVideo.m
createVideo.m
 
 
cropVideo_old.m
cropVideo_old.m
 
 
exFrameCreateAvi.m
exFrameCreateAvi.m
 
 
experiment_summaries.mat
experiment_summaries.mat
 
 
ez2hsv.m
ez2hsv.m
 
 
findShift.m
findShift.m
 
 
fundMatrixFromBGimg.m
fundMatrixFromBGimg.m
 
 
fundMatrixFromMatchedPoints.m
fundMatrixFromMatchedPoints.m
 
 
getColor.m
getColor.m
 
 
getColorHist.m
getColorHist.m
 
 
getColorHistROI.m
getColorHistROI.m
 
 
getDataFromVideo.m
getDataFromVideo.m
 
 
getHsvBounds.m
getHsvBounds.m
 
 
getPelletCoords.m
getPelletCoords.m
 
 
getPixelBounds.m
getPixelBounds.m
 
 
getPx2mm.m
getPx2mm.m
 
 
getTrialData.m
getTrialData.m
 
 
getTrialInfo.m
getTrialInfo.m
 
 
getVideoImageRGBHist.m
getVideoImageRGBHist.m
 
 
gridCal_beta.m
gridCal_beta.m
 
 
lbox2.fig
lbox2.fig
 
 
lbox2.m
lbox2.m
 
 
markPawJoints.m
markPawJoints.m
 
 
matlab.mat
matlab.mat
 
 
maxSpread.m
maxSpread.m
 
 
pawData.m
pawData.m
 
 
plot1dDistance.m
plot1dDistance.m
 
 
plot1dDistanceScores.m
plot1dDistanceScores.m
 
 
plot3dDistance.m
plot3dDistance.m
 
 
plot3dDistanceScores.m
plot3dDistanceScores.m
 
 
plot3dDistance_video.m
plot3dDistance_video.m
 
 
plot3din2d.m
plot3din2d.m
 
 
plotEarlyMidLate.m
plotEarlyMidLate.m
 
 
plotHullEccentricity.m
plotHullEccentricity.m
 
 
plotPawSpread.m
plotPawSpread.m
 
 
plotTopHull.m
plotTopHull.m
 
 
populate_XL_columns.m
populate_XL_columns.m
 
 
readAllVideos.m
readAllVideos.m
 
 
readBinAvi.m
readBinAvi.m
 
 
readBinAvi_PC.asv
readBinAvi_PC.asv
 
 
readBinAvi_PC.m
readBinAvi_PC.m
 
 
readVideo.m
readVideo.m
 
 
read_sr_binImg.m
read_sr_binImg.m
 
 
read_sr_binImg_PC.m
read_sr_binImg_PC.m
 
 
rubiks.png
rubiks.png
 
 
rubiksCalibration.png
rubiksCalibration.png
 
 
rubiksPxToMm.m
rubiksPxToMm.m
 
 
runAnalysis.m
runAnalysis.m
 
 
runCheckData.m
runCheckData.m
 
 
runPlot.m
runPlot.m
 
 
runTestPlots.m
runTestPlots.m
 
 
runfindShift.m
runfindShift.m
 
 
sample_plot.m
sample_plot.m
 
 
scoreVideoData.m
scoreVideoData.m
 
 
scrap.m
scrap.m
 
 
script_DKL_pawIdentify_test.m
script_DKL_pawIdentify_test.m
 
 

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This is a bunch of code that attempts to locate a rat paw in a video for use in behavioral analysis.

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Image analysis to identify rat paws in motion capture.

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GPL-3.0 license
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