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update pyproject CI #27: Commit 8e7d28b pushed by JaskRendix
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add missing pipeline tests for no-raw, failure, warnings, QC, paralle… CI #26: Commit 3b3e6ca pushed by JaskRendix
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fix renumbering and QC handling; add valid mzML fixture and new tests CI #25: Commit c8ea121 pushed by JaskRendix
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add pytest-cov, configure coverage in pyproject CI #24: Commit 726825d pushed by JaskRendix
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update README.md CI #23: Commit 6e35e21 pushed by JaskRendix
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add metadata validation module + full test suite + integration in ann… CI #22: Commit 4bfd4bd pushed by JaskRendix
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update README.md CI #21: Commit 18c8324 pushed by JaskRendix
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add explicit docker_image support across CLI, pipeline, and job layer CI #20: Commit 2f9c0fe pushed by JaskRendix
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update README.md CI #19: Commit 92cd996 pushed by JaskRendix
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update README.md CI #18: Commit f266c73 pushed by JaskRendix
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add progress bar and per‑job timing metrics to run_parallel CI #17: Commit 09e3f0e pushed by JaskRendix
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add structured logging across pipeline, msconvert, annotation, and pa… CI #16: Commit 228bd29 pushed by JaskRendix
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redesign parallel engine with per-job workdirs, structured msconvert … CI #15: Commit 0b5e747 pushed by JaskRendix
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update README.md CI #14: Commit 7f5e5e2 pushed by JaskRendix
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add test coverage for QCResult, postprocess behavior, and postprocess… CI #13: Commit 815e6dd pushed by JaskRendix
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introduce QCResult dataclass and integrate basic QC metrics across pi… CI #12: Commit cf45dd5 pushed by JaskRendix
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surface annotation warnings and return RawAnnotationResult in job res… CI #11: Commit ce69bb1 pushed by JaskRendix
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replace int return with RawAnnotationResult + add validation layer CI #10: Commit caa4692 pushed by JaskRendix
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add full test suite for native, docker, and arg‑builder behavior CI #9: Commit f7cedca pushed by JaskRendix
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revise Docker documentation, update CLI help text, and refactor mscon… CI #8: Commit 286acba pushed by JaskRendix
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add Docker-based msconvert option and integrate across pipeline, CLI,… CI #7: Commit 696c03c pushed by JaskRendix
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update README.md CI #6: Commit 69d0659 pushed by JaskRendix
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add retry logic to parallel execution CI #5: Commit ed26970 pushed by JaskRendix
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add test suite for job module CI #4: Commit 3d87fd5 pushed by JaskRendix
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add parallel execution, job module, and test suite CI #3: Commit 3b8ce36 pushed by JaskRendix
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