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Update all GitHub Actions. #14

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Merged
gouttegd merged 1 commit into from
May 14, 2026
Merged

Update all GitHub Actions. #14

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42 changes: 21 additions & 21 deletions src/incatools/odk/templates/_dynamic_workflows.jinja2
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Original file line number Diff line number Diff line change
Expand Up @@ -80,7 +80,7 @@ jobs:
# Steps represent a sequence of tasks that will be executed as part of the job
steps:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
- uses: actions/checkout@v4
- uses: actions/checkout@v6

- name: Run ontology QC checks
env:
Expand All @@ -106,28 +106,28 @@ jobs:
runs-on: ubuntu-latest
container: obolibrary/odklite:{% if env is defined -%}{{env['ODK_VERSION'] or "latest" }}{%- else %}latest{% endif %}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
# Checks-out main branch under "main" directory
- uses: actions/checkout@v4
- uses: actions/checkout@v6
with:
ref: master
path: master
- name: Diff classification
run: export ROBOT_JAVA_ARGS=-Xmx6G; robot diff --labels True --left master/src/ontology/{{ project.id }}-edit.{{ project.edit_format }} --left-catalog master/src/ontology/catalog-v001.xml --right src/ontology/{{ project.id }}-edit.{{ project.edit_format }} --right-catalog src/ontology/catalog-v001.xml -f markdown -o edit-diff.md
- name: Upload diff
uses: actions/upload-artifact@v4
uses: actions/upload-artifact@v7
with:
name: edit-diff.md
path: edit-diff.md
classify_branch:
runs-on: ubuntu-latest
container: obolibrary/odklite:{% if env is defined -%}{{env['ODK_VERSION'] or "latest" }}{%- else %}latest{% endif %}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- name: Classify ontology
run: cd src/ontology; make IMP=FALSE PAT=FALSE MIR=FALSE {{ project.id }}.owl
- name: Upload PR {{ project.id }}.owl
uses: actions/upload-artifact@v4
uses: actions/upload-artifact@v7
with:
name: {{ project.id }}-pr.owl
path: src/ontology/{{ project.id }}.owl
Expand All @@ -136,13 +136,13 @@ jobs:
runs-on: ubuntu-latest
container: obolibrary/odklite:{% if env is defined -%}{{env['ODK_VERSION'] or "latest" }}{%- else %}latest{% endif %}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
with:
ref: master
- name: Classify ontology
run: cd src/ontology; make IMP=FALSE PAT=FALSE MIR=FALSE {{ project.id }}.owl
- name: Upload master {{ project.id }}.owl
uses: actions/upload-artifact@v4
uses: actions/upload-artifact@v7
with:
name: {{ project.id }}-master.owl
path: src/ontology/{{ project.id }}.owl
Expand All @@ -154,31 +154,31 @@ jobs:
runs-on: ubuntu-latest
container: obolibrary/odklite:{% if env is defined -%}{{env['ODK_VERSION'] or "latest" }}{%- else %}latest{% endif %}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- name: Download master classification
uses: actions/download-artifact@v4
uses: actions/download-artifact@v8
with:
name: {{ project.id }}-master.owl
path: src/ontology/{{ project.id }}-master.owl
- name: Download PR classification
uses: actions/download-artifact@v4
uses: actions/download-artifact@v8
with:
name: {{ project.id }}-pr.owl
path: src/ontology/{{ project.id }}-pr.owl
- name: Diff classification
run: export ROBOT_JAVA_ARGS=-Xmx6G; cd src/ontology; robot diff --labels True --left {{ project.id }}-master.owl/{{ project.id }}.owl --left-catalog catalog-v001.xml --right {{ project.id }}-pr.owl/{{ project.id }}.owl --right-catalog catalog-v001.xml -f markdown -o classification-diff.md
- name: Upload diff
uses: actions/upload-artifact@v4
uses: actions/upload-artifact@v7
with:
name: classification-diff.md
path: src/ontology/classification-diff.md
post_comment:
needs: [diff_classification, edit_file]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- name: Download reasoned diff
uses: actions/download-artifact@v4
uses: actions/download-artifact@v8
with:
name: classification-diff.md
path: classification-diff.md
Expand All @@ -187,13 +187,13 @@ jobs:
- name: Post reasoned comment
env:
GITHUB_TOKEN: {% raw %}${{ secrets.GITHUB_TOKEN }}{% endraw %}
uses: NejcZdovc/comment-pr@v1.1.1
uses: NejcZdovc/comment-pr@v2
with:
file: "../../comment.md"
identifier: "REASONED"
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- name: Download edit diff
uses: actions/download-artifact@v4
uses: actions/download-artifact@v8
with:
name: edit-diff.md
path: edit-diff.md
Expand All @@ -202,7 +202,7 @@ jobs:
- name: Post comment
env:
GITHUB_TOKEN: {% raw %}${{ secrets.GITHUB_TOKEN }}{% endraw %}
uses: NejcZdovc/comment-pr@v1.1.1
uses: NejcZdovc/comment-pr@v2
with:
file: "../../edit-comment.md"
identifier: "UNREASONED"
Expand All @@ -226,15 +226,15 @@ jobs:
post_diff:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- name: Prepare release comment
env:
GITHUB_SHA: {% raw %}${{ github.sha }}{% endraw %}
run: "echo \"[Here's a diff of how this release impacts {{ project.id }}.owl](https://github.com/obophenotype/{{ project.repo }}/blob/${% raw %}${{ env.GITHUB_SHA }}{% endraw %}/src/ontology/reports/release-diff.md)\" >comment.md"
- name: Post reasoned comment
env:
GITHUB_TOKEN: {% raw %}${{ secrets.GITHUB_TOKEN }}{% endraw %}
uses: NejcZdovc/comment-pr@v2.0.0
uses: NejcZdovc/comment-pr@v2
with:
github_token: {% raw %}${{ env.GITHUB_TOKEN }}{% endraw %}
file: "../../comment.md"
Expand All @@ -260,7 +260,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- name: Checkout main
uses: actions/checkout@v4
uses: actions/checkout@v6

- name: Deploy docs
uses: mhausenblas/mkdocs-deploy-gh-pages@master
Expand Down
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