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Feature request: include explicit exon coordinates for alternative splicing events

Status: Open.

#33 In HerwigLab/IsoTools2;

· OnegItzhak opened on Jul 7, 2026

no transcript_ids produced in the gtf and the transcript tables

Status: Open.

#32 In HerwigLab/IsoTools2;

· bhaggal opened on May 27, 2026

Difference between MONO_EXON and UNSPLICED tags

Status: Open.

#31 In HerwigLab/IsoTools2;

· kbseah opened on Feb 10, 2026

Run alternative_splicing_events on filtered transcripts

Status: Open.

#30 In HerwigLab/IsoTools2;

· IngoMue opened on Feb 6, 2026

Issues with Differential Isoform Expression Test

Status: Open.

#29 In HerwigLab/IsoTools2;

· mpizzagalli777 opened on Feb 5, 2026

Trouble while working with .csi indexes

Status: Open.

#28 In HerwigLab/IsoTools2;

· lorenzopanca5 opened on Nov 28, 2025

Lookup of Gene object in Transcriptome should warn if identifier is not unique

Status: Open.

#27 In HerwigLab/IsoTools2;

· kbseah opened on Nov 18, 2025

add_orf_prediction fails with KeyError when Fasta file has lowercase characters

Status: Open.

#26 In HerwigLab/IsoTools2;

· kbseah opened on Oct 22, 2025

IsoTools2 integration with Iso-Seq data

Status: Open.

#25 In HerwigLab/IsoTools2;

· RoyPollak opened on Oct 17, 2025

add_domains_to_table silently fails to add some overlapping domains with options overlap=True and source="hmmer"

Status: Open.

#23 In HerwigLab/IsoTools2;

· kbseah opened on Aug 6, 2025

Broken download links for example dataset in documentation

Status: Open.

#21 In HerwigLab/IsoTools2;

· kbseah opened on Aug 5, 2025

Deprecated alias np.bool

Status: Open.

#20 In HerwigLab/IsoTools2;

· kbseah opened on Aug 4, 2025