run fails on Nenopore data

[gianfilippo]

Hi,

I tried your code on a Nanopore sample I have. I converted FASTQ to FASTA and used it as input.

I get the following in the log file
[V] args[0]=daccord
[V] args[1]=-t20
[V] args[2]=reads.\052las
[V] args[3]=reads.dam
PosixFdInput(reads.*las,0): No such file or directory

daccord-0.0.10-release-20170526170720-x86_64-etch-linux-gnu/bin/../lib/libmaus2.so.2(libmaus2::util::StackTrace::StackTrace()+0x55)[0x2b824904df95]
daccord(libmaus2::exception::LibMausException::LibMausException()+0x20)[0x42c180]
daccord-0.0.10-release-20170526170720-x86_64-etch-linux-gnu/bin/../lib/libmaus2.so.2(libmaus2::aio::PosixFdInput::PosixFdInput(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&, int)+0x205)[0x2b8249023e25]
accord-0.0.10-release-20170526170720-x86_64-etch-linux-gnu/bin/../lib/libmaus2.so.2(libmaus2::aio::PosixFdInputStreamFactory::constructUnique(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)+0x22a)[0x2b824902d6fa]
daccord(libmaus2::aio::InputStreamFactoryContainer::constructUnique(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)+0xc3)[0x432513]
daccord-0.0.10-release-20170526170720-x86_64-etch-linux-gnu/bin/../lib/libmaus2.so.2(libmaus2::aio::InputStreamInstance::InputStreamInstance(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)+0x7b)[0x2b82490f1c5b]
daccord()[0x4511f3]
daccord()[0x41cbb9]
daccord()[0x40ea68]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x2b824c2fd555]
daccord()[0x410512]

[DerekLake]

I also have this exact issue. Any insight on how to fix this?