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Optitype drops most reads for HLA typing from targeted sequencing panel WES

Status: Open.

#156 In FRED-2/OptiType;

· das2000sidd opened on Jul 3, 2026

Updating the HLA definitions

Status: Open.

#155 In FRED-2/OptiType;

· afw-code opened on Jul 1, 2026

uint16 problem

Status: Open.

#153 In FRED-2/OptiType;

· mromanov2001 opened on May 14, 2026

Mouse WES

Status: Open.

#150 In FRED-2/OptiType;

· dincerkilic opened on Oct 2, 2024

OptiType Fails to Open Intermediate BAM File

Status: Open.

#149 In FRED-2/OptiType;

· valeriaMCuevas opened on Sep 10, 2024

IOError: [Errno 2] could not open alignment file

Status: Open.

#148 In FRED-2/OptiType;

· lukaas33 opened on Jul 31, 2024

HLA typing 10x scRNA-seq data with Optitype

Status: Open.

#141 In FRED-2/OptiType;

· Githubuser3838 opened on Oct 11, 2023

this team is no longer maintained

Status: Open.

#140 In FRED-2/OptiType;

· SunYong0821 opened on Oct 10, 2023

Maximal read length of 0 bps exceeded

Status: Open.

#137 In FRED-2/OptiType;

· frankligy opened on May 3, 2023

ValueError: too many values to unpack

Status: Open.

#136 In FRED-2/OptiType;

· szabolcstarapcsak opened on Apr 24, 2023

error using docker

Status: Open.

#132 In FRED-2/OptiType;

· anoronh4 opened on Aug 24, 2022

output file column description

Status: Open.

#131 In FRED-2/OptiType;

· cjieming2 opened on May 31, 2022