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@EI-CoreBioinformatics

EI-CoreBioinformatics

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  1. mikado mikado Public

    Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

    Python 114 20

  2. portcullis portcullis Public

    Splice junction analysis and filtering from BAM files

    C++ 44 9

  3. reat reat Public

    Robust Eukaryotic Annotation Toolkit

    Python 17 3

  4. minos minos Public

    The labyrinth king judges your gene models.

    Python 10

  5. AnnoOddities AnnoOddities Public

    AnnoOddities detects, identifies, and characterises oddities in genome annotations

    Python 4

  6. LiftClean LiftClean Public

    Lifton/Liftoff transcript filtering and comparison pipeline

    Python 2

Repositories

Showing 10 of 30 repositories
  • EI-CoreBioinformatics/FusariumPanAnno's past year of commit activity
    1 GPL-3.0 0 0 0 Updated Jul 17, 2026
  • LiftClean Public

    Lifton/Liftoff transcript filtering and comparison pipeline

    EI-CoreBioinformatics/LiftClean's past year of commit activity
    Python 2 MIT 0 1 0 Updated Jun 23, 2026
  • minos Public

    The labyrinth king judges your gene models.

    EI-CoreBioinformatics/minos's past year of commit activity
    Python 10 LGPL-3.0 0 13 0 Updated Apr 30, 2026
  • vizgen_data_transfer Public

    Vizgen Data Transfer

    EI-CoreBioinformatics/vizgen_data_transfer's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Mar 16, 2026
  • Pre_meet-annotation-workshop-2026 Public

    EI Annotation Workshop 2026 (Pre-meet)

    EI-CoreBioinformatics/Pre_meet-annotation-workshop-2026's past year of commit activity
    0 MIT 0 0 0 Updated Feb 5, 2026
  • annotation-workshop-2026 Public

    EI Genome Annotation Workshop 2026

    EI-CoreBioinformatics/annotation-workshop-2026's past year of commit activity
    1 MIT 0 0 0 Updated Feb 5, 2026
  • mikado Public

    Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

    EI-CoreBioinformatics/mikado's past year of commit activity
    Python 114 LGPL-3.0 20 19 (1 issue needs help) 4 Updated Jan 30, 2026
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    EI-CoreBioinformatics/bioconda-recipes's past year of commit activity
    Shell 0 MIT 4,126 0 0 Updated Jan 30, 2026
  • AnnoOddities Public

    AnnoOddities detects, identifies, and characterises oddities in genome annotations

    EI-CoreBioinformatics/AnnoOddities's past year of commit activity
    Python 4 MIT 0 0 0 Updated Jan 28, 2026
  • ENA_validation Public

    Script to pre-screen gff3 for validation

    EI-CoreBioinformatics/ENA_validation's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Apr 15, 2025

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